Os03g0169700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0169700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 115.94 | 0.506 | 9.71 | -0.328 | 1.74 | 1.2 | -0.114 | 0.369 | 0.219 | 20.4 | 11.28 | 10 | -- | -- |
| 116.35 | 0.502 | 9.71 | -0.315 | 1.75 | 1.21 | 0.243 | -- | 0.228 | 20.4 | 11.69 | 10 | -- | -- |
| 115.95 | 0.502 | 9.71 | -0.323 | 1.75 | 1.2 | -- | 0.315 | 0.219 | 20.4 | 11.53 | 10 | -- | -- |
| 116.5 | 0.503 | 9.71 | -0.331 | 1.73 | 1.22 | -- | -- | 0.217 | 20.4 | 11.62 | 10 | -- | -- |
| 210.85 | 0.676 | 9.66 | -0.362 | -- | 1.99 | -- | 0.164 | 0.227 | -- | 7.434 | 3 | -- | -- |
| 139.55 | 0.554 | 9.74 | -0.321 | 2.78 | -- | 0.288 | -- | 0.18 | 21.9 | -- | -- | -- | -- |
| 139.87 | 0.554 | 9.74 | -0.332 | 2.78 | -- | -- | -- | 0.179 | 21.9 | -- | -- | -- | -- |
| 210.94 | 0.676 | 9.66 | -0.366 | -- | 1.99 | -- | -- | 0.216 | -- | 7.459 | 3 | -- | -- |
| 119.34 | 0.509 | 9.7 | -- | 1.75 | 1.22 | -- | -- | 0.251 | 20.4 | 12.25 | 10 | -- | -- |
| 601.54 | 1.15 | 9.67 | -0.302 | -- | -- | -- | -- | 0.179 | -- | -- | -- | -- | -- |
| 142.77 | 0.559 | 9.74 | -- | 2.78 | -- | -- | -- | 0.216 | 21.9 | -- | -- | -- | -- |
| 214.46 | 0.682 | 9.65 | -- | -- | 1.98 | -- | -- | 0.258 | -- | 7.336 | 3 | -- | -- |
| 603.94 | 1.15 | 9.66 | -- | -- | -- | -- | -- | 0.212 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 103.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 2 | 103.62 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 13 |
| 4 | 104.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 17 | 1 |
| 42 | 108.26 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 107 | 111.89 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 9 |
| 168 | 112.86 | temperature | 20 | 30 | > th | dose independent | rect. | 16 | 13 |
| 175 | 112.91 | temperature | 15 | 270 | > th | dose dependent | sin | 14 | NA |
| 178 | 112.93 | temperature | 20 | 720 | > th | dose dependent | sin | 17 | NA |
| 192 | 113.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 19 |
| 216 | 113.48 | temperature | 30 | 270 | < th | dose dependent | sin | 15 | NA |
| 239 | 113.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 12 |
| 247 | 113.78 | temperature | 30 | 720 | < th | dose dependent | sin | 18 | NA |
| 252 | 113.86 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 12 |
| 264 | 113.97 | radiation | 1 | 90 | > th | dose independent | rect. | 5 | 11 |
| 297 | 114.18 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 2 |
| 334 | 114.47 | radiation | 10 | 10 | < th | dose dependent | rect. | 4 | 17 |
| 392 | 114.82 | radiation | 10 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 403 | 114.90 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 9 |
| 454 | 115.21 | radiation | 10 | 10 | < th | dose dependent | rect. | 16 | 22 |
| 489 | 115.36 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 14 |
| 514 | 115.49 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 527 | 115.56 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 543 | 115.60 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 8 |
| 558 | 115.69 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 650 | 116.05 | humidity | 90 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 652 | 116.07 | temperature | 25 | 720 | > th | dose independent | sin | 19 | NA |
| 661 | 116.11 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 4 |
| 699 | 116.26 | radiation | 10 | 10 | < th | dose dependent | rect. | 16 | 20 |
| 704 | 116.29 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 8 |
| 709 | 116.31 | radiation | 10 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 721 | 116.36 | radiation | 10 | 10 | < th | dose dependent | no | NA | NA |
| 733 | 116.38 | radiation | 10 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 737 | 116.39 | radiation | 10 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 772 | 116.49 | radiation | 1 | 30 | < th | dose independent | rect. | 4 | 17 |
| 775 | 116.50 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 17 |
| 803 | 116.60 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 838 | 116.74 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 14 |
| 906 | 117.09 | radiation | 1 | 30 | < th | dose independent | sin | 0 | NA |
| 922 | 117.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 18 | 10 |
| 924 | 117.15 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 7 |
| 977 | 117.32 | radiation | 1 | 30 | < th | dose independent | rect. | 2 | 19 |
| 984 | 117.35 | radiation | 1 | 90 | < th | dose dependent | sin | 1 | NA |