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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0169300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.59 (0.0335) R2 : 0.371
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.43 (0.0877) R2dC : 0.367 R2C : 0.366
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.113 (0.0705) R2dN8 : 0.00459 R2N8 : 0.0035
σ : 0.631
deviance : 182.23
__
_____
C
peak time of C : 18.3
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
153.62 0.582 3.59 0.604 1.1 -0.876 1.49 -0.0628 -0.123 19.1 28.87 379 -- --
153.59 0.577 3.59 0.607 1.11 -0.866 1.5 -- -0.12 19.1 29.21 378 -- --
159.2 0.588 3.58 0.586 1.09 -0.883 -- -0.421 -0.108 19.1 29.26 387 -- --
159.51 0.588 3.58 0.577 1.09 -0.868 -- -- -0.12 19.1 29.26 396 -- --
183.32 0.631 3.53 0.732 -- -1.5 -- -0.0613 -0.0425 -- 5.85 683 -- --
165.75 0.604 3.58 0.638 1.43 -- 1.61 -- -0.0499 18.3 -- -- -- --
172.1 0.614 3.57 0.62 1.44 -- -- -- -0.0439 18.2 -- -- -- --
181.03 0.627 3.56 0.617 -- -1.68 -- -- -0.117 -- 5.561 734 -- --
166.34 0.601 3.6 -- 1.04 -0.963 -- -- -0.179 18.9 30 459 -- --
279.12 0.781 3.55 0.581 -- -- -- -- -0.0754 -- -- -- -- --
182.23 0.631 3.59 -- 1.43 -- -- -- -0.113 18.3 -- -- -- --
190.67 0.643 3.57 -- -- -1.71 -- -- -0.183 -- 5.06 742 -- --
288.02 0.792 3.56 -- -- -- -- -- -0.14 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 145.61 radiation 40.0 270 < th dose independent rect. 6 6
3 146.11 radiation 40.0 270 < th dose independent rect. 18 18
5 146.17 atmosphere 1010.0 270 < th dose independent rect. 17 8
6 146.22 temperature 15.0 270 > th dose independent rect. 16 9
8 146.48 radiation 40.0 270 < th dose independent rect. 7 16
10 146.51 temperature 15.0 270 > th dose independent rect. 18 17
11 146.54 temperature 15.0 270 > th dose independent rect. 17 19
15 146.84 temperature 10.0 270 > th dose dependent rect. 17 8
22 147.32 radiation 20.0 270 < th dose independent rect. 7 18
24 147.35 radiation 40.0 270 < th dose dependent rect. 7 18
25 147.37 temperature 15.0 270 > th dose dependent rect. 18 6
31 147.54 radiation 40.0 270 < th dose dependent rect. 7 5
36 147.64 radiation 40.0 270 < th dose dependent rect. 7 16
46 147.85 temperature 15.0 1440 > th dose independent rect. 9 4
59 148.11 temperature 15.0 270 > th dose independent rect. 7 16
100 148.70 humidity 50.0 270 > th dose independent rect. 6 6
113 148.82 temperature 10.0 270 > th dose dependent rect. 18 17
119 148.93 temperature 15.0 270 > th dose independent rect. 5 7
126 149.00 wind 9.0 270 < th dose independent rect. 12 17
130 149.02 atmosphere 1010.0 10 < th dose independent rect. 18 9
134 149.12 radiation 1.0 270 > th dose independent rect. 18 18
144 149.19 atmosphere 995.0 270 > th dose independent rect. 5 7
145 149.19 atmosphere 1015.0 270 < th dose independent rect. 5 7
146 149.19 temperature 10.0 270 > th dose independent rect. 12 17
153 149.24 precipitation 0.1 270 < th dose independent rect. 5 7
154 149.24 precipitation 0.1 270 < th dose dependent rect. 5 7
165 149.34 wind 9.0 270 < th dose independent rect. 5 7
170 149.36 humidity 60.0 270 > th dose independent rect. 7 4
175 149.40 radiation 1.0 270 > th dose independent rect. 4 8
193 149.45 temperature 15.0 1440 > th dose independent rect. 13 8
200 149.53 temperature 15.0 270 > th dose independent rect. 10 23
202 149.57 atmosphere 1015.0 270 < th dose independent rect. 7 16
225 149.82 humidity 90.0 270 < th dose independent rect. 12 5
234 149.89 temperature 25.0 270 > th dose independent rect. 12 5
250 150.02 wind 9.0 270 < th dose independent rect. 11 20
261 150.09 temperature 15.0 270 > th dose independent rect. 11 20
268 150.14 temperature 15.0 270 > th dose independent rect. 7 4
269 150.15 atmosphere 1015.0 270 < th dose independent rect. 17 19
276 150.23 radiation 40.0 270 < th dose dependent rect. 18 18
280 150.25 atmosphere 995.0 270 > th dose independent rect. 7 4
281 150.25 atmosphere 1015.0 270 < th dose independent rect. 7 4
285 150.27 atmosphere 1015.0 270 < th dose independent rect. 18 17
288 150.28 temperature 15.0 270 > th dose independent rect. 4 23
293 150.30 precipitation 0.1 270 < th dose independent rect. 7 4
294 150.30 wind 1.0 270 > th dose independent rect. 6 6
295 150.30 precipitation 0.1 270 < th dose dependent rect. 7 4
297 150.31 wind 9.0 270 < th dose independent rect. 7 4
301 150.34 precipitation 0.1 270 < th dose independent rect. 17 19
302 150.34 precipitation 0.1 270 < th dose dependent rect. 17 19
304 150.36 wind 9.0 270 < th dose independent rect. 1 15
306 150.36 precipitation 0.1 270 < th dose independent rect. 12 18
307 150.36 humidity 50.0 270 > th dose independent rect. 17 19
309 150.36 precipitation 0.1 270 < th dose dependent rect. 12 18
328 150.47 wind 9.0 270 < th dose independent rect. 12 5
331 150.49 radiation 1.0 270 > th dose independent rect. 12 5
334 150.51 atmosphere 1010.0 10 < th dose independent rect. 20 7
343 150.55 atmosphere 1010.0 270 < th dose independent rect. 12 5
357 150.64 temperature 10.0 270 > th dose independent rect. 12 5
363 150.65 wind 1.0 270 > th dose independent rect. 7 4
372 150.68 radiation 40.0 270 < th dose independent rect. 16 9
373 150.68 temperature 10.0 270 > th dose independent rect. 1 15
374 150.68 atmosphere 1015.0 270 < th dose independent rect. 1 15
377 150.69 wind 9.0 270 < th dose independent rect. 11 7
381 150.70 humidity 50.0 270 > th dose independent rect. 18 17
383 150.72 atmosphere 1010.0 270 < th dose independent rect. 11 7
384 150.73 radiation 20.0 270 < th dose independent rect. 16 9
396 150.77 atmosphere 995.0 270 > th dose independent rect. 12 18
401 150.78 precipitation 0.1 270 < th dose independent rect. 18 17
402 150.78 wind 9.0 270 < th dose independent rect. 17 19
405 150.78 precipitation 0.1 270 < th dose dependent rect. 18 17
410 150.80 radiation 40.0 270 < th dose dependent rect. 16 9
411 150.81 radiation 1.0 270 > th dose independent rect. 7 4
412 150.81 wind 9.0 270 < th dose independent rect. 16 9
416 150.83 radiation 20.0 270 < th dose independent rect. 23 8
422 150.85 temperature 15.0 270 > th dose independent rect. 23 8
426 150.86 precipitation 0.1 270 < th dose independent rect. 12 5
428 150.86 precipitation 0.1 270 < th dose dependent rect. 12 5
430 150.87 temperature 30.0 270 < th dose independent rect. 23 8
431 150.87 humidity 50.0 270 > th dose independent rect. 23 8
434 150.87 atmosphere 995.0 270 > th dose independent rect. 23 8
441 150.89 wind 9.0 270 < th dose independent rect. 23 8
462 150.94 temperature 10.0 270 > th dose independent rect. 11 7
470 150.95 radiation 40.0 270 < th dose dependent rect. 23 8
479 150.97 temperature 10.0 270 > th dose dependent rect. 12 5
481 150.98 precipitation 0.1 270 < th dose independent rect. 16 9
484 150.98 precipitation 0.1 270 < th dose dependent rect. 16 9
496 151.03 wind 9.0 270 < th dose independent rect. 18 17
506 151.07 atmosphere 995.0 270 > th dose independent rect. 18 17
516 151.12 humidity 90.0 90 < th dose independent rect. 7 6
518 151.12 atmosphere 995.0 270 > th dose independent rect. 17 19
519 151.13 wind 1.0 270 > th dose independent rect. 7 16
520 151.13 precipitation 0.1 270 < th dose independent rect. 7 16
525 151.13 precipitation 0.1 270 < th dose dependent rect. 7 16
551 151.23 precipitation 0.1 270 < th dose independent rect. 23 8
553 151.23 precipitation 0.1 270 < th dose dependent rect. 23 8
563 151.28 precipitation 0.1 270 < th dose independent rect. 11 7
565 151.28 precipitation 0.1 270 < th dose dependent rect. 11 7
570 151.29 wind 9.0 270 < th dose independent rect. 7 16
571 151.29 temperature 15.0 10 > th dose dependent rect. 20 7
573 151.30 temperature 10.0 10 > th dose dependent rect. 20 17
596 151.36 temperature 15.0 10 > th dose independent rect. 20 16
612 151.41 precipitation 0.1 270 < th dose independent rect. 11 20
613 151.41 precipitation 0.1 270 < th dose dependent rect. 11 20
618 151.42 precipitation 0.1 270 < th dose independent rect. 1 15
620 151.42 precipitation 0.1 270 < th dose dependent rect. 1 15
629 151.45 wind 1.0 270 > th dose independent rect. 17 8
641 151.47 temperature 15.0 270 > th dose independent rect. 5 20
745 151.71 humidity 50.0 270 > th dose independent rect. 17 8
751 151.72 radiation 10.0 43200 < th dose dependent rect. 20 8
757 151.74 atmosphere 995.0 270 > th dose independent rect. 12 5
827 151.91 temperature 15.0 10 > th dose independent rect. 18 9
830 151.92 precipitation 0.1 1440 < th dose independent rect. 10 3
831 151.92 wind 1.0 270 > th dose independent rect. 12 5
834 151.92 precipitation 0.1 1440 < th dose dependent rect. 10 3
873 151.98 wind 9.0 270 < th dose dependent rect. 12 5
880 152.00 wind 1.0 10 > th dose independent rect. 7 7
888 152.02 atmosphere 995.0 270 > th dose independent rect. 11 20
890 152.03 humidity 50.0 10 > th dose independent rect. 8 6
909 152.07 atmosphere 995.0 270 > th dose independent rect. 1 15
912 152.08 atmosphere 995.0 270 > th dose independent rect. 17 8
970 152.18 humidity 50.0 270 > th dose dependent rect. 7 4