Os03g0169000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF246, plant family protein.
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Os03g0169000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF246, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.71 | 0.307 | 6.91 | -0.772 | 0.67 | 2 | -0.412 | -0.656 | -0.303 | 6.65 | 17.35 | 10 | -- | -- |
| 43.12 | 0.306 | 6.9 | -0.67 | 0.675 | 1.99 | -0.386 | -- | -0.273 | 6.72 | 17.12 | 12 | -- | -- |
| 43.1 | 0.306 | 6.91 | -0.779 | 0.675 | 2 | -- | -0.632 | -0.305 | 6.63 | 17.48 | 12 | -- | -- |
| 43.49 | 0.307 | 6.9 | -0.683 | 0.676 | 2.01 | -- | -- | -0.275 | 6.65 | 17.12 | 12 | -- | -- |
| 65.1 | 0.378 | 6.92 | -0.717 | -- | 1.76 | -- | -0.696 | -0.252 | -- | 17.48 | 12 | -- | -- |
| 92.44 | 0.451 | 6.83 | -0.24 | 0.709 | -- | -0.259 | -- | 0.0476 | 10.4 | -- | -- | -- | -- |
| 92.71 | 0.451 | 6.83 | -0.25 | 0.709 | -- | -- | -- | 0.0472 | 10.4 | -- | -- | -- | -- |
| 65.5 | 0.377 | 6.91 | -0.612 | -- | 1.77 | -- | -- | -0.221 | -- | 17.1 | 5 | -- | -- |
| 54.64 | 0.346 | 6.88 | -- | 0.622 | 1.72 | -- | -- | -0.157 | 7.21 | 17.12 | 12 | -- | -- |
| 123.52 | 0.519 | 6.85 | -0.262 | -- | -- | -- | -- | 0.0446 | -- | -- | -- | -- | -- |
| 94.36 | 0.454 | 6.82 | -- | 0.711 | -- | -- | -- | 0.0751 | 10.5 | -- | -- | -- | -- |
| 74.75 | 0.403 | 6.89 | -- | -- | 1.57 | -- | -- | -0.134 | -- | 17.47 | 3 | -- | -- |
| 125.34 | 0.523 | 6.84 | -- | -- | -- | -- | -- | 0.0737 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.17 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 2 | 43.19 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 7 | 43.30 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 25 | 43.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 2 |
| 27 | 43.44 | temperature | 15 | 10 | > th | dose dependent | no | NA | NA |
| 52 | 43.57 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 80 | 43.78 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 81 | 43.79 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 143 | 44.07 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 146 | 44.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 186 | 44.24 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 205 | 44.32 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 244 | 44.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 308 | 44.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 333 | 44.87 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 371 | 45.06 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 447 | 45.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 458 | 45.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 460 | 45.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 495 | 45.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 501 | 45.72 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 740 | 46.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 760 | 47.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 776 | 47.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 890 | 47.65 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 893 | 47.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 960 | 47.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 961 | 47.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 23 |
| 978 | 47.94 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |