Os03g0168800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0168800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.85 | 0.281 | 13.1 | 1.86 | 0.959 | -0.948 | -3.06 | 5.25 | 0.716 | 6.64 | 1.012 | 904 | -- | -- |
| 39.82 | 0.294 | 13.1 | 2.01 | 0.794 | -1.12 | 0.701 | -- | 0.781 | 8.14 | 0.5396 | 1174 | -- | -- |
| 41.66 | 0.301 | 13.1 | 1.88 | 1.64 | -1.51 | -- | 0.794 | 0.742 | 5.62 | 0.3604 | 709 | -- | -- |
| 40.89 | 0.298 | 13.1 | 2.02 | 0.763 | -1.05 | -- | -- | 0.777 | 8.01 | 0.42 | 1184 | -- | -- |
| 48.23 | 0.323 | 13.1 | 2.18 | -- | 0.258 | -- | 0.566 | 0.87 | -- | 0.06901 | 693 | -- | -- |
| 46.48 | 0.32 | 13.1 | 2.2 | 0.341 | -- | 0.287 | -- | 0.85 | 6.1 | -- | -- | -- | -- |
| 46.65 | 0.32 | 13.1 | 2.2 | 0.344 | -- | -- | -- | 0.849 | 5.82 | -- | -- | -- | -- |
| 48.27 | 0.324 | 13.1 | 2.17 | -- | -0.434 | -- | -- | 0.872 | -- | 0.3225 | 1425 | -- | -- |
| 111.77 | 0.492 | 13.1 | -- | 0.725 | -1.58 | -- | -- | 0.392 | 8.44 | 0.009712 | 24070 | -- | -- |
| 52.77 | 0.339 | 13.1 | 2.21 | -- | -- | -- | -- | 0.857 | -- | -- | -- | -- | -- |
| 174 | 0.617 | 13.1 | -- | 0.379 | -- | -- | -- | 0.604 | 5.55 | -- | -- | -- | -- |
| 76.52 | 0.407 | 13.2 | -- | -- | -1.6 | -- | -- | 0.172 | -- | 0.008535 | 47520 | -- | -- |
| 181.45 | 0.629 | 13.2 | -- | -- | -- | -- | -- | 0.612 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.82 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 21 |
| 4 | 36.72 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 10 |
| 18 | 37.08 | radiation | 1.0 | 720 | > th | dose independent | sin | 18 | NA |
| 34 | 37.21 | radiation | 1.0 | 720 | < th | dose independent | rect. | 21 | 21 |
| 35 | 37.27 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 21 | 21 |
| 49 | 37.43 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 17 |
| 52 | 37.59 | radiation | 1.0 | 720 | > th | dose independent | rect. | 15 | 15 |
| 62 | 37.81 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 63 | 37.86 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 77 | 37.95 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 84 | 38.06 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 85 | 38.06 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 4 | 14 |
| 86 | 38.06 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 87 | 38.10 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 12 | 19 |
| 88 | 38.11 | radiation | 1.0 | 720 | < th | dose independent | rect. | 4 | 14 |
| 89 | 38.11 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 6 | 11 |
| 95 | 38.13 | temperature | 25.0 | 720 | > th | dose independent | rect. | 13 | 11 |
| 98 | 38.15 | radiation | 1.0 | 720 | < th | dose independent | rect. | 3 | 16 |
| 110 | 38.24 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 6 |
| 126 | 38.26 | temperature | 25.0 | 720 | > th | dose independent | rect. | 11 | 13 |
| 127 | 38.27 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 161 | 38.46 | radiation | 1.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 164 | 38.47 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 193 | 38.51 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 213 | 38.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 219 | 38.54 | radiation | 1.0 | 720 | < th | dose independent | rect. | 12 | 20 |
| 231 | 38.57 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 235 | 38.57 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 6 |
| 297 | 38.68 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 6 |
| 299 | 38.69 | temperature | 25.0 | 720 | > th | dose independent | sin | 18 | NA |
| 314 | 38.72 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 322 | 38.74 | humidity | 80.0 | 1440 | < th | dose independent | sin | 4 | NA |
| 329 | 38.75 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 4 |
| 333 | 38.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 4 |
| 352 | 38.78 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 5 |
| 367 | 38.79 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 420 | 38.84 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 423 | 38.85 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 424 | 38.85 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 428 | 38.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 429 | 38.85 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 442 | 38.87 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 7 | 16 |
| 510 | 38.96 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 579 | 39.01 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 580 | 39.02 | humidity | 80.0 | 1440 | > th | dose independent | sin | 3 | NA |
| 612 | 39.03 | radiation | 1.0 | 720 | < th | dose dependent | no | NA | NA |
| 641 | 39.05 | radiation | 1.0 | 1440 | < th | dose independent | no | NA | NA |
| 793 | 39.12 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 824 | 39.14 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 13 | 10 |
| 831 | 39.15 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 13 | 8 |
| 863 | 39.17 | radiation | 1.0 | 1440 | > th | dose independent | no | NA | NA |
| 963 | 39.19 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 985 | 39.23 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 9 | 4 |