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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0168400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.45 (0.0435) R2 : 0.214
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.02 (0.104) R2dC : 0.166 R2C : 0.153
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.478 (0.0914) R2dN8 : 0.0608 R2N8 : 0.0475
σ : 0.82
deviance : 306.99
__
_____
C
peak time of C : 11.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
290.51 0.801 3.48 -0.375 1 -0.728 0.184 0.298 -0.658 9.72 90.07 141 -- --
290.67 0.794 3.48 -0.36 1.01 -0.72 0.157 -- -0.656 9.7 90 148 -- --
290.63 0.794 3.48 -0.366 0.999 -0.723 -- 0.262 -0.656 9.74 90 140 -- --
290.76 0.794 3.48 -0.355 1 -0.714 -- -- -0.653 9.73 90 148 -- --
335.5 0.858 3.5 -0.423 -- -0.705 -- -0.0987 -0.586 -- 68 3 -- --
302.07 0.815 3.46 -0.434 1.01 -- 0.133 -- -0.526 11 -- -- -- --
302.14 0.814 3.46 -0.429 1.01 -- -- -- -0.525 11 -- -- -- --
335.41 0.853 3.49 -0.424 -- -0.71 -- -- -0.583 -- 68 2 -- --
294.03 0.799 3.48 -- 1.01 -0.76 -- -- -0.622 9.66 89.95 149 -- --
366.16 0.894 3.48 -0.452 -- -- -- -- -0.533 -- -- -- -- --
306.99 0.82 3.45 -- 1.02 -- -- -- -0.478 11.1 -- -- -- --
340.17 0.859 3.48 -- -- -0.716 -- -- -0.538 -- 68 2 -- --
371.55 0.9 3.47 -- -- -- -- -- -0.483 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 278.36 wind 3.0 90 > th dose dependent rect. 4 1
3 280.09 wind 7.0 1440 > th dose dependent rect. 1 2
4 280.11 wind 7.0 1440 > th dose independent rect. 1 2
13 280.84 wind 3.0 90 > th dose independent rect. 4 1
15 281.79 wind 1.0 10 < th dose dependent rect. 1 1
17 282.12 wind 1.0 10 < th dose dependent rect. 11 15
19 282.25 wind 1.0 10 < th dose dependent rect. 13 13
39 283.55 humidity 90.0 10 < th dose independent rect. 5 1
40 283.78 temperature 20.0 90 < th dose dependent rect. 4 1
41 283.82 atmosphere 1010.0 90 < th dose independent rect. 2 16
55 284.55 temperature 30.0 270 < th dose dependent rect. 8 2
59 284.78 radiation 1.0 14400 < th dose dependent rect. 19 9
61 285.04 temperature 25.0 270 < th dose independent rect. 8 3
66 285.13 wind 1.0 10 < th dose independent rect. 24 2
83 285.81 wind 1.0 10 < th dose independent rect. 11 15
90 285.92 wind 1.0 10 < th dose independent rect. 13 13
98 286.33 wind 7.0 90 < th dose independent rect. 18 8
99 286.39 wind 9.0 270 < th dose independent rect. 16 9
106 286.50 temperature 20.0 10 > th dose independent rect. 3 16
107 286.53 radiation 30.0 270 < th dose independent rect. 15 10
111 286.61 humidity 90.0 10 < th dose independent rect. 2 4
116 286.67 wind 9.0 270 < th dose independent rect. 1 15
117 286.68 atmosphere 995.0 270 > th dose independent rect. 16 9
123 286.81 radiation 40.0 270 < th dose dependent rect. 15 10
131 286.84 wind 9.0 90 < th dose dependent rect. 18 8
133 286.87 precipitation 0.1 270 < th dose independent rect. 16 9
134 286.87 precipitation 0.1 270 < th dose dependent rect. 16 9
135 286.89 humidity 50.0 270 > th dose independent rect. 1 15
141 286.96 humidity 90.0 90 < th dose independent rect. 24 13
143 286.99 humidity 90.0 10 < th dose independent rect. 24 6
144 286.99 humidity 50.0 10 > th dose independent rect. 3 15
148 287.04 temperature 10.0 270 > th dose independent rect. 16 9
150 287.04 temperature 10.0 270 > th dose independent rect. 1 15
153 287.07 precipitation 0.1 270 < th dose independent rect. 1 15
154 287.07 precipitation 0.1 270 < th dose dependent rect. 1 15
155 287.09 radiation 1.0 10 > th dose independent rect. 5 9
178 287.11 wind 5.0 10 < th dose independent rect. 18 9
181 287.16 radiation 1.0 90 < th dose independent rect. 3 15
184 287.21 temperature 10.0 270 > th dose dependent rect. 1 15
192 287.35 radiation 1.0 90 < th dose dependent rect. 3 15
195 287.41 precipitation 0.1 90 < th dose independent rect. 18 8
196 287.41 precipitation 0.1 90 < th dose dependent rect. 18 8
210 287.53 radiation 10.0 90 < th dose independent rect. 18 8
211 287.54 atmosphere 995.0 90 > th dose independent rect. 18 8
213 287.56 temperature 10.0 90 > th dose independent rect. 18 8
214 287.56 humidity 50.0 90 > th dose independent rect. 18 8
220 287.58 radiation 40.0 90 < th dose dependent rect. 18 8
232 287.65 humidity 90.0 10 < th dose dependent rect. 24 14
242 287.72 wind 9.0 10 < th dose dependent rect. 18 9
247 287.80 wind 3.0 270 > th dose independent rect. 1 5
248 287.80 atmosphere 995.0 270 > th dose independent rect. 1 15
249 287.80 radiation 1.0 270 > th dose independent rect. 17 19
251 287.81 temperature 25.0 720 < th dose dependent rect. 24 1
252 287.82 radiation 10.0 90 > th dose independent rect. 9 3
262 287.88 wind 1.0 270 > th dose independent rect. 16 9
263 287.88 temperature 30.0 720 < th dose dependent rect. 24 3
271 287.96 humidity 90.0 90 > th dose independent rect. 23 9
274 287.97 atmosphere 995.0 14400 > th dose independent rect. 8 5
297 288.03 humidity 60.0 10 > th dose independent rect. 18 9
300 288.04 temperature 30.0 10 < th dose independent rect. 18 9
306 288.05 humidity 90.0 90 < th dose independent rect. 18 19
307 288.05 temperature 20.0 10 < th dose dependent rect. 4 3
322 288.11 radiation 20.0 90 < th dose independent rect. 2 16
323 288.11 humidity 60.0 90 > th dose dependent rect. 21 12
330 288.18 wind 1.0 270 > th dose independent rect. 12 4
335 288.20 temperature 10.0 270 > th dose independent rect. 5 7
336 288.20 atmosphere 995.0 270 > th dose independent rect. 5 7
337 288.20 atmosphere 1015.0 270 < th dose independent rect. 5 7
338 288.20 humidity 90.0 90 < th dose independent rect. 4 9
339 288.20 temperature 10.0 270 > th dose independent rect. 12 17
342 288.21 humidity 80.0 90 > th dose dependent rect. 2 6
345 288.22 precipitation 0.1 270 < th dose independent rect. 5 7
346 288.22 humidity 50.0 270 > th dose independent rect. 16 9
347 288.22 precipitation 0.1 270 < th dose dependent rect. 5 7
350 288.23 temperature 10.0 90 > th dose dependent rect. 18 8
360 288.31 humidity 90.0 10 < th dose dependent rect. 24 6
365 288.32 temperature 20.0 10 < th dose dependent rect. 6 1
367 288.32 temperature 20.0 90 < th dose dependent rect. 24 6
369 288.33 temperature 20.0 10 > th dose independent rect. 2 7
372 288.33 humidity 70.0 10 > th dose dependent rect. 3 6
402 288.41 humidity 50.0 90 > th dose independent rect. 6 8
410 288.43 wind 9.0 10 < th dose independent rect. 3 16
419 288.47 precipitation 0.1 270 < th dose independent rect. 12 17
421 288.47 precipitation 0.1 270 < th dose dependent rect. 12 17
430 288.52 temperature 30.0 10 < th dose independent rect. 7 7
434 288.52 humidity 90.0 10 < th dose dependent rect. 19 19
469 288.56 humidity 60.0 270 > th dose dependent rect. 21 10
482 288.61 wind 9.0 270 < th dose independent rect. 5 7
493 288.65 atmosphere 995.0 270 > th dose independent rect. 16 20
495 288.65 humidity 50.0 10 > th dose dependent rect. 18 9
510 288.68 atmosphere 1000.0 10 > th dose independent rect. 19 8
519 288.70 temperature 20.0 90 < th dose dependent rect. 4 8
525 288.72 precipitation 0.1 10 < th dose independent rect. 19 8
527 288.72 radiation 20.0 10 < th dose independent rect. 3 15
531 288.72 precipitation 0.1 10 < th dose dependent rect. 19 8
532 288.73 temperature 10.0 10 > th dose independent rect. 19 8
544 288.73 temperature 10.0 10 > th dose independent rect. 3 16
559 288.75 humidity 50.0 270 > th dose independent rect. 12 17
562 288.77 precipitation 0.1 270 < th dose independent rect. 16 20
564 288.77 precipitation 0.1 270 < th dose dependent rect. 16 20
566 288.78 radiation 40.0 30 < th dose independent rect. 12 21
569 288.79 radiation 40.0 30 < th dose independent rect. 3 16
577 288.80 wind 9.0 270 < th dose independent rect. 12 17
581 288.81 humidity 70.0 90 > th dose dependent rect. 23 10
582 288.81 humidity 50.0 10 > th dose dependent rect. 3 15
591 288.85 wind 1.0 90 > th dose independent rect. 12 6
598 288.86 humidity 90.0 90 > th dose independent rect. 1 7
608 288.87 humidity 50.0 270 > th dose dependent rect. 8 2
609 288.89 humidity 90.0 90 > th dose independent rect. 3 5
629 288.91 wind 9.0 10 < th dose dependent rect. 9 17
630 288.92 atmosphere 995.0 14400 > th dose independent rect. 10 3
637 288.94 humidity 60.0 270 > th dose independent rect. 9 1
669 288.99 precipitation 0.1 90 < th dose independent rect. 18 19
670 288.99 precipitation 0.1 90 < th dose dependent rect. 18 19
674 289.01 temperature 30.0 10 < th dose independent rect. 9 5
681 289.03 radiation 1.0 10 > th dose independent rect. 9 5
693 289.05 precipitation 0.1 10 < th dose independent rect. 3 16
697 289.05 precipitation 0.1 10 < th dose dependent rect. 3 16
698 289.05 temperature 20.0 90 < th dose dependent rect. 4 17
729 289.08 radiation 40.0 30 < th dose independent rect. 12 7
742 289.11 wind 9.0 270 < th dose independent rect. 16 20
771 289.17 wind 9.0 270 < th dose independent rect. 12 4
775 289.18 temperature 10.0 270 > th dose independent rect. 12 4
777 289.18 atmosphere 1015.0 270 < th dose independent rect. 12 4
780 289.18 temperature 10.0 270 > th dose independent rect. 16 20
790 289.20 radiation 1.0 30 > th dose dependent rect. 11 1
800 289.22 wind 1.0 270 > th dose independent rect. 1 15
803 289.23 precipitation 0.1 270 < th dose independent rect. 12 4
804 289.23 precipitation 0.1 270 < th dose dependent rect. 12 4
809 289.23 humidity 80.0 10 > th dose dependent rect. 3 14
820 289.25 humidity 90.0 270 < th dose independent rect. 12 4
839 289.29 wind 5.0 10 < th dose independent rect. 9 18
860 289.34 humidity 90.0 90 > th dose independent rect. 21 11
875 289.37 wind 5.0 90 < th dose independent rect. 9 17
883 289.39 humidity 80.0 10 > th dose independent rect. 19 8
902 289.42 radiation 1.0 90 > th dose independent sin 3 NA
921 289.45 wind 1.0 10 > th dose independent rect. 9 3
928 289.46 radiation 20.0 10 < th dose independent rect. 3 13
933 289.47 wind 1.0 10 > th dose independent rect. 7 7
934 289.47 temperature 30.0 270 < th dose independent rect. 16 9
943 289.48 temperature 20.0 90 < th dose dependent sin 3 NA
946 289.48 temperature 20.0 10 < th dose dependent rect. 4 9
947 289.49 radiation 1.0 30 < th dose independent sin 2 NA
955 289.50 temperature 10.0 10 > th dose dependent rect. 19 8
974 289.52 atmosphere 995.0 270 > th dose independent rect. 12 17
975 289.52 humidity 50.0 10 > th dose dependent sin 6 NA