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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0168100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Late embryogenesis abundant protein repeat containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.83 (0.0288) R2 : 0.000848
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0377 (0.0606) R2dN8 : 0.0011 R2N8 : 0.000848
σ : 0.542
deviance : 134.84
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
125.01 0.525 2.81 0.278 0.215 -0.478 0.33 -1.06 0.0494 0.265 84 5280 -- --
126.36 0.524 2.81 0.325 0.218 -0.555 0.281 -- 0.0584 0.218 82 5280 -- --
125.46 0.522 2.82 0.274 0.212 -0.481 -- -0.962 0.0455 0.328 83 5280 -- --
126.63 0.524 2.81 0.317 0.216 -0.542 -- -- 0.0577 0.255 82 5287 -- --
127.89 0.527 2.81 0.247 -- -0.454 -- -0.97 0.0482 -- 84 6026 -- --
129.95 0.534 2.83 0.331 0.171 -- 0.227 -- -0.00312 0.786 -- -- -- --
130.17 0.534 2.83 0.323 0.171 -- -- -- -0.00435 0.84 -- -- -- --
128.92 0.529 2.81 0.31 -- -0.488 -- -- 0.0609 -- 83 6012 -- --
129.08 0.529 2.82 -- 0.163 -0.518 -- -- 0.0529 0.202 82.97 7526 -- --
131.99 0.537 2.82 0.329 -- -- -- -- -0.00119 -- -- -- -- --
132.92 0.539 2.84 -- 0.176 -- -- -- -0.0403 0.922 -- -- -- --
130.73 0.533 2.81 -- -- -0.542 -- -- 0.0585 -- 83 7456 -- --
134.84 0.542 2.83 -- -- -- -- -- -0.0377 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.05 atmosphere 1000.0 90 < th dose dependent rect. 22 1
15 118.00 temperature 25.0 30 > th dose dependent rect. 22 2
32 121.25 precipitation 0.1 4320 < th dose independent rect. 15 2
33 121.25 precipitation 0.1 4320 < th dose dependent rect. 15 2
34 121.30 precipitation 0.1 4320 > th dose independent rect. 15 2
41 121.70 precipitation 0.1 4320 > th dose dependent rect. 15 2
48 121.95 humidity 90.0 90 > th dose independent rect. 19 2
50 122.02 wind 1.0 90 < th dose dependent rect. 9 1
52 122.18 temperature 25.0 10 > th dose dependent rect. 23 6
59 122.31 wind 1.0 90 < th dose independent rect. 9 1
66 122.38 temperature 25.0 270 < th dose independent rect. 17 12
68 122.43 wind 1.0 720 < th dose independent rect. 12 1
69 122.43 wind 3.0 14400 < th dose independent rect. 24 5
73 122.44 humidity 90.0 10 > th dose independent rect. 18 2
84 122.53 wind 1.0 720 < th dose independent rect. 8 6
96 122.63 wind 3.0 14400 > th dose independent rect. 24 5
98 122.64 wind 3.0 14400 < th dose independent rect. 24 1
106 122.69 wind 1.0 720 < th dose independent rect. 12 7
107 122.72 wind 1.0 720 < th dose dependent rect. 9 5
108 122.72 temperature 25.0 90 > th dose dependent rect. 22 10
115 122.82 humidity 90.0 1440 > th dose dependent rect. 7 2
124 122.86 humidity 90.0 1440 > th dose dependent rect. 7 7
127 122.89 wind 9.0 14400 > th dose independent rect. 10 1
129 122.90 wind 3.0 14400 < th dose independent rect. 4 1
132 122.91 temperature 25.0 270 < th dose independent rect. 20 9
142 122.95 wind 3.0 14400 > th dose independent rect. 4 1
147 122.98 wind 3.0 14400 > th dose independent rect. 24 1
154 123.00 wind 1.0 720 < th dose independent rect. 8 11
161 123.03 humidity 80.0 14400 > th dose independent rect. 6 1
172 123.08 wind 5.0 43200 < th dose dependent rect. 1 1
179 123.11 humidity 80.0 14400 < th dose independent rect. 6 1
195 123.17 wind 1.0 10 < th dose independent rect. 15 7
205 123.19 wind 1.0 10 < th dose independent rect. 17 5
215 123.20 wind 1.0 10 < th dose dependent rect. 15 7
220 123.21 wind 1.0 10 < th dose dependent rect. 17 5
223 123.22 wind 1.0 10 < th dose independent rect. 21 1
228 123.22 wind 1.0 10 < th dose dependent rect. 21 1
229 123.22 wind 1.0 720 < th dose dependent rect. 12 2
235 123.25 wind 5.0 14400 < th dose dependent rect. 24 5
251 123.31 wind 9.0 14400 < th dose independent rect. 10 1
255 123.31 atmosphere 1000.0 90 < th dose dependent rect. 22 10
256 123.32 precipitation 0.1 1440 < th dose independent rect. 5 3
258 123.32 precipitation 0.1 1440 < th dose dependent rect. 5 3
263 123.34 wind 9.0 14400 > th dose independent rect. 7 4
273 123.38 temperature 25.0 270 < th dose independent sin 13 NA
278 123.38 atmosphere 1000.0 10 < th dose dependent rect. 23 10
282 123.40 precipitation 0.1 4320 > th dose independent rect. 9 8
291 123.42 precipitation 0.1 4320 < th dose independent rect. 9 8
293 123.42 wind 1.0 14400 > th dose dependent rect. 24 2
294 123.42 precipitation 0.1 4320 < th dose dependent rect. 9 8
365 123.60 wind 1.0 10 < th dose independent rect. 9 1
383 123.62 wind 1.0 14400 > th dose dependent rect. 24 6
394 123.64 wind 1.0 4320 > th dose independent rect. 17 2
421 123.66 wind 5.0 10 > th dose dependent rect. 23 1
431 123.67 precipitation 0.1 1440 > th dose dependent rect. 5 3
438 123.68 wind 1.0 720 < th dose dependent rect. 9 10
440 123.69 precipitation 0.1 1440 > th dose independent rect. 5 3
448 123.70 wind 9.0 43200 > th dose dependent rect. 12 1
452 123.71 humidity 80.0 14400 > th dose independent rect. 2 2
453 123.71 humidity 80.0 14400 < th dose independent rect. 2 2
484 123.77 humidity 90.0 1440 < th dose independent rect. 7 1
524 123.80 humidity 90.0 1440 > th dose independent rect. 7 1
536 123.81 humidity 80.0 4320 < th dose independent rect. 10 1
568 123.83 wind 9.0 1440 > th dose dependent rect. 12 1
573 123.84 wind 3.0 14400 < th dose independent sin 9 NA
604 123.85 wind 9.0 14400 < th dose independent rect. 6 5
610 123.85 wind 3.0 43200 > th dose independent rect. 18 14
615 123.85 wind 1.0 720 < th dose dependent rect. 13 6
630 123.87 humidity 80.0 4320 > th dose independent rect. 10 1
653 123.88 wind 3.0 43200 < th dose dependent rect. 5 2
671 123.89 wind 5.0 14400 < th dose dependent rect. 3 3
695 123.91 wind 1.0 14400 > th dose dependent rect. 24 11
698 123.92 temperature 25.0 270 > th dose independent rect. 17 8
708 123.93 temperature 20.0 30 > th dose dependent rect. 19 15
723 123.96 wind 3.0 14400 > th dose independent sin 9 NA
821 124.04 wind 9.0 1440 > th dose independent rect. 12 1
822 124.04 wind 5.0 1440 < th dose independent rect. 3 2
827 124.04 wind 1.0 10 < th dose dependent rect. 9 1
838 124.05 humidity 90.0 14400 < th dose dependent rect. 3 1
847 124.05 wind 7.0 14400 < th dose dependent rect. 24 11
849 124.06 wind 5.0 1440 > th dose independent rect. 3 2
909 124.10 precipitation 0.1 4320 > th dose dependent rect. 7 10
928 124.12 humidity 90.0 1440 > th dose independent rect. 7 7
988 124.15 temperature 25.0 270 > th dose independent rect. 17 14
991 124.15 wind 1.0 14400 > th dose dependent sin 8 NA