Os03g0167700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Serine/threonine protein phosphatase PP2A-3 catalytic subunit (EC 3.1.3.16).
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Os03g0167700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Serine/threonine protein phosphatase PP2A-3 catalytic subunit (EC 3.1.3.16).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 12.15 | 0.164 | 10.8 | -0.133 | 0.659 | -0.0986 | -0.362 | -0.411 | 0.0223 | 6.43 | 1015 | 7738 | -- | -- |
| 12.91 | 0.167 | 10.8 | -0.232 | 0.683 | -0.0887 | -0.27 | -- | 0.000384 | 6.35 | 1013 | 14467 | -- | -- |
| 12.48 | 0.165 | 10.8 | -0.138 | 0.658 | -0.0979 | -- | -0.411 | 0.0234 | 6.4 | 1014 | 7884 | -- | -- |
| 13.09 | 0.169 | 10.8 | -0.266 | 0.656 | -0.109 | -- | -- | -0.00753 | 6.44 | 1013 | 14456 | -- | -- |
| 34.96 | 0.275 | 10.8 | -0.122 | -- | -0.0918 | -- | -0.416 | 0.0366 | -- | 1014 | 7874 | -- | -- |
| 13.5 | 0.172 | 10.8 | -0.228 | 0.661 | -- | -0.357 | -- | 0.0146 | 6.42 | -- | -- | -- | -- |
| 13.81 | 0.174 | 10.8 | -0.232 | 0.66 | -- | -- | -- | 0.0157 | 6.39 | -- | -- | -- | -- |
| 35.19 | 0.276 | 10.8 | -0.222 | -- | -0.203 | -- | -- | 0.00301 | -- | 1015 | 4342 | -- | -- |
| 15.07 | 0.181 | 10.8 | -- | 0.658 | 0.0695 | -- | -- | 0.0627 | 6.43 | 1011 | 47520 | -- | -- |
| 36.43 | 0.282 | 10.8 | -0.215 | -- | -- | -- | -- | 0.0297 | -- | -- | -- | -- | -- |
| 15.24 | 0.183 | 10.8 | -- | 0.657 | -- | -- | -- | 0.0415 | 6.41 | -- | -- | -- | -- |
| 36.42 | 0.281 | 10.8 | -- | -- | -0.21 | -- | -- | 0.0185 | -- | 1014 | 4283 | -- | -- |
| 37.65 | 0.286 | 10.8 | -- | -- | -- | -- | -- | 0.0535 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 11.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 2 | 11.87 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 4 | 11.88 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 10 | 11.89 | temperature | 25 | 90 | > th | dose independent | rect. | 18 | 13 |
| 18 | 11.91 | temperature | 25 | 4320 | > th | dose independent | rect. | 18 | 9 |
| 33 | 11.93 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 14 |
| 52 | 11.97 | temperature | 25 | 90 | < th | dose independent | sin | 12 | NA |
| 66 | 11.98 | temperature | 10 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 76 | 12.00 | temperature | 25 | 90 | > th | dose independent | rect. | 13 | 18 |
| 77 | 12.00 | temperature | 30 | 4320 | < th | dose dependent | rect. | 24 | 1 |
| 91 | 12.02 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 92 | 12.02 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 99 | 12.02 | wind | 7 | 1440 | < th | dose independent | rect. | 21 | 12 |
| 106 | 12.03 | wind | 7 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 121 | 12.04 | temperature | 25 | 90 | > th | dose independent | sin | 12 | NA |
| 125 | 12.04 | wind | 7 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 143 | 12.05 | humidity | 80 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 168 | 12.07 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 221 | 12.09 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 224 | 12.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 8 |
| 233 | 12.09 | wind | 7 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 235 | 12.09 | humidity | 80 | 4320 | < th | dose dependent | rect. | 7 | 2 |
| 289 | 12.11 | radiation | 1 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 311 | 12.12 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 9 |
| 393 | 12.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 407 | 12.15 | temperature | 10 | 4320 | > th | dose dependent | rect. | 5 | 1 |
| 410 | 12.15 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 1 |
| 429 | 12.16 | humidity | 60 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 469 | 12.16 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 15 | 4 |
| 486 | 12.17 | wind | 3 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 487 | 12.17 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 504 | 12.17 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 512 | 12.17 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 5 |
| 528 | 12.18 | wind | 5 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 541 | 12.18 | wind | 1 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 567 | 12.19 | wind | 3 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 573 | 12.19 | wind | 7 | 1440 | < th | dose independent | rect. | 21 | 7 |
| 626 | 12.20 | wind | 7 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 634 | 12.20 | temperature | 30 | 4320 | < th | dose dependent | sin | 11 | NA |
| 639 | 12.20 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 661 | 12.20 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 12 |
| 670 | 12.21 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 17 | NA |
| 684 | 12.21 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 11 | 13 |
| 685 | 12.21 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 11 | 13 |
| 721 | 12.21 | temperature | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 755 | 12.21 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 10 | 13 |
| 782 | 12.22 | atmosphere | 1015 | 4320 | > th | dose independent | sin | 17 | NA |
| 785 | 12.22 | atmosphere | 1015 | 4320 | < th | dose independent | sin | 15 | NA |
| 790 | 12.22 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 795 | 12.22 | wind | 5 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 803 | 12.22 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 806 | 12.22 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 11 |
| 876 | 12.22 | atmosphere | 1010 | 4320 | > th | dose dependent | sin | 15 | NA |
| 998 | 12.22 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 20 | 21 |