Os03g0167100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein S28e family protein.
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Os03g0167100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein S28e family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 37.79 | 0.289 | 11.3 | 0.681 | 0.423 | 1.48 | 0.183 | 13.5 | 0.161 | 21.7 | 10.28 | 14 | -- | -- |
| 47.61 | 0.321 | 11.3 | 0.739 | 0.458 | 0.167 | 0.24 | -- | 0.146 | 22.1 | 10.69 | 4380 | -- | -- |
| 37.9 | 0.287 | 11.3 | 0.666 | 0.423 | 1.12 | -- | 12.5 | 0.159 | 21.8 | 10.3 | 13 | -- | -- |
| 47.52 | 0.321 | 11.3 | 0.679 | 0.46 | 0.191 | -- | -- | 0.127 | 22.2 | 10.7 | 4322 | -- | -- |
| 48.49 | 0.324 | 11.3 | 0.666 | -- | 0.802 | -- | 11.5 | 0.16 | -- | 10.3 | 14 | -- | -- |
| 48.28 | 0.326 | 11.3 | 0.678 | 0.418 | -- | 0.177 | -- | 0.179 | 22 | -- | -- | -- | -- |
| 48.39 | 0.326 | 11.3 | 0.67 | 0.416 | -- | -- | -- | 0.178 | 22.1 | -- | -- | -- | -- |
| 51.03 | 0.333 | 11.2 | 0.814 | -- | -2.48 | -- | -- | 0.303 | -- | 10.36 | 13 | -- | -- |
| 59.41 | 0.359 | 11.3 | -- | 0.459 | 0.181 | -- | -- | 0.0665 | 22.3 | 11.1 | 4381 | -- | -- |
| 58.89 | 0.359 | 11.2 | 0.676 | -- | -- | -- | -- | 0.179 | -- | -- | -- | -- | -- |
| 60.24 | 0.363 | 11.3 | -- | 0.42 | -- | -- | -- | 0.104 | 22.3 | -- | -- | -- | -- |
| 56.02 | 0.349 | 11.3 | -- | -- | -0.523 | -- | -- | 0.0624 | -- | 7.332 | 44860 | -- | -- |
| 70.95 | 0.393 | 11.3 | -- | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.44 | wind | 9 | 30 | > th | dose dependent | rect. | 15 | 20 |
| 3 | 37.77 | wind | 9 | 30 | > th | dose dependent | rect. | 15 | 7 |
| 29 | 37.79 | wind | 9 | 30 | > th | dose dependent | rect. | 15 | 4 |
| 37 | 37.94 | wind | 9 | 10 | > th | dose independent | rect. | 15 | 1 |
| 45 | 37.94 | wind | 9 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 53 | 38.13 | wind | 9 | 30 | > th | dose independent | rect. | 15 | 20 |
| 89 | 38.25 | wind | 9 | 30 | > th | dose independent | rect. | 15 | 5 |
| 212 | 38.92 | wind | 9 | 30 | > th | dose dependent | sin | 13 | NA |
| 281 | 40.68 | wind | 9 | 30 | > th | dose independent | sin | 14 | NA |
| 311 | 41.86 | wind | 9 | 30 | < th | dose independent | sin | 14 | NA |
| 318 | 41.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 4 |
| 319 | 41.96 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 4 |
| 320 | 41.96 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 6 |
| 358 | 42.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 2 |
| 362 | 42.01 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 2 |
| 404 | 42.18 | humidity | 70 | 10 | < th | dose independent | rect. | 15 | 17 |
| 422 | 42.23 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 425 | 42.24 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 14 |
| 444 | 42.29 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 510 | 42.55 | humidity | 70 | 10 | < th | dose independent | rect. | 15 | 2 |
| 511 | 42.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 522 | 42.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 3 |
| 537 | 42.60 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 11 |
| 578 | 42.67 | humidity | 70 | 10 | < th | dose independent | rect. | 15 | 5 |
| 624 | 42.73 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 15 | 1 |
| 645 | 42.76 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 654 | 42.76 | humidity | 60 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 662 | 42.77 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 672 | 42.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 690 | 42.80 | humidity | 50 | 43200 | > th | dose independent | rect. | 19 | 15 |
| 692 | 42.80 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 15 | 1 |
| 694 | 42.81 | humidity | 70 | 43200 | > th | dose independent | rect. | 21 | 6 |
| 702 | 42.81 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 703 | 42.82 | temperature | 20 | 4320 | > th | dose independent | sin | 14 | NA |
| 757 | 42.84 | humidity | 60 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 779 | 42.86 | humidity | 60 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 793 | 42.88 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 867 | 42.94 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 920 | 42.97 | wind | 9 | 30 | > th | dose dependent | rect. | 18 | 22 |
| 963 | 43.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |