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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0167000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.94 (0.0475) R2 : 0.56
β1 : -0.502 (0.175) R2dD : 0.00867 R2D : -0.0345
β2 : 1.59 (0.112) R2dC : 0.196 R2C : 0.119
β3 : 2.12 (0.186) R2dE : 0.146 R2E : -0.0823
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -6.43 (0.6) R2dD*E : 0.122 R2D*E : -0.0122
γ1 : 1.55 (0.106) R2dN8 : 0.315 R2N8 : 0.127
σ : 0.871
deviance : 349.37
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_____
C
peak time of C : 1.43
E
wheather : radiation
threshold : 20
memory length : 1432
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 1.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
348.5 0.877 3.94 -0.517 1.59 2.12 -0.469 -6.42 1.55 1.47 20 1433 11.1 1.1
419.49 0.954 3.97 -0.62 1.53 1.89 -0.173 -- 1.58 1.36 34.66 1357 11.2 0.95
349.37 0.871 3.94 -0.502 1.59 2.12 -- -6.43 1.55 1.43 20 1432 11.1 1.1
418.44 0.953 3.97 -0.762 1.52 1.75 -- -- 1.52 1.54 33.91 1354 11.3 0.933
489.44 1.03 3.93 -0.52 -- 2.15 -- -6.02 1.52 -- 21.23 1329 11.3 1.28
500.69 1.05 4.07 -1.06 1.59 -- -0.613 -- 1.03 1.44 -- -- -- --
502.18 1.05 4.07 -1.03 1.58 -- -- -- 1.04 1.38 -- -- -- --
520.15 1.06 3.92 -0.769 -- 2.13 -- -- 1.45 -- 64.65 1299 11.6 1.4
434.95 0.971 3.96 -- 1.54 1.8 -- -- 1.56 1.54 35 1357 11.2 0.95
656.6 1.2 4.05 -0.972 -- -- -- -- 1.07 -- -- -- -- --
530.41 1.08 4.04 -- 1.57 -- -- -- 1.15 1.36 -- -- -- --
533.5 1.08 3.96 -- -- 2.49 -- -- 1.46 -- 69.83 1306 11.5 1.48
681.55 1.22 4.02 -- -- -- -- -- 1.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 351.58 radiation 20 1440 < th dose dependent rect. 11 1
3 368.99 radiation 20 1440 < th dose independent rect. 11 1
7 376.42 radiation 10 1440 < th dose dependent rect. 9 7
9 378.50 radiation 10 1440 < th dose dependent rect. 10 4
14 381.17 radiation 10 1440 > th dose independent rect. 11 2
17 382.26 radiation 10 1440 < th dose independent rect. 11 5
22 385.66 radiation 10 1440 < th dose independent rect. 13 3
31 387.50 radiation 10 1440 < th dose dependent rect. 13 1
32 387.71 radiation 10 1440 < th dose independent rect. 11 9
37 387.78 radiation 10 1440 < th dose independent rect. 11 16
39 387.81 radiation 10 1440 < th dose independent rect. 11 13
87 391.42 radiation 10 1440 < th dose dependent sin 22 NA
107 392.53 radiation 10 1440 < th dose independent sin 19 NA
117 393.57 radiation 10 1440 > th dose independent rect. 8 5
122 394.21 radiation 10 1440 < th dose dependent rect. 8 12
126 394.30 radiation 10 1440 < th dose dependent rect. 8 19
127 394.32 radiation 10 1440 < th dose dependent rect. 8 16
159 395.93 radiation 20 1440 < th dose independent rect. 8 5
162 396.00 radiation 1 1440 > th dose dependent rect. 11 2
245 398.86 radiation 20 1440 < th dose dependent rect. 2 14
248 398.89 radiation 20 1440 < th dose dependent rect. 23 17
252 398.94 radiation 20 1440 < th dose dependent rect. 19 21
283 400.13 radiation 20 1440 < th dose independent rect. 17 21
291 400.50 radiation 20 1440 < th dose independent rect. 2 12
295 400.52 radiation 20 1440 < th dose independent rect. 5 9
301 400.54 radiation 20 1440 < th dose independent rect. 23 15
312 400.58 radiation 20 1440 < th dose independent rect. 19 19
326 400.69 radiation 20 1440 < th dose dependent rect. 11 22
333 400.75 radiation 20 1440 < th dose independent rect. 11 22
354 401.18 temperature 20 1440 > th dose independent rect. 22 3
381 401.59 temperature 20 1440 > th dose independent rect. 23 1
389 401.95 temperature 20 1440 < th dose independent rect. 22 3
437 402.54 temperature 20 1440 < th dose independent rect. 23 1
475 403.42 radiation 20 1440 < th dose independent sin 2 NA
528 403.73 radiation 20 1440 < th dose dependent rect. 2 22
544 403.77 radiation 20 1440 < th dose dependent no NA NA
602 404.61 wind 3 43200 < th dose dependent rect. 8 1
613 405.00 humidity 60 43200 > th dose independent rect. 23 2
658 405.56 radiation 20 1440 < th dose independent rect. 5 15
659 405.56 radiation 20 1440 < th dose independent rect. 2 18
665 405.57 radiation 20 1440 < th dose independent rect. 23 21
692 405.60 radiation 20 1440 < th dose independent rect. 5 19
695 405.60 radiation 20 1440 < th dose independent rect. 2 22
706 405.61 radiation 20 1440 < th dose independent rect. 5 22
723 405.63 radiation 20 1440 < th dose independent no NA NA
847 406.74 humidity 60 43200 < th dose dependent rect. 22 5
853 406.84 humidity 60 43200 > th dose independent rect. 21 10
870 407.08 humidity 70 43200 < th dose dependent rect. 22 9
896 407.43 wind 3 43200 > th dose independent rect. 8 1
900 407.54 humidity 70 43200 < th dose dependent rect. 23 3
902 407.57 humidity 60 43200 < th dose independent rect. 22 4
926 407.79 wind 3 43200 < th dose independent rect. 8 1
927 407.79 humidity 60 43200 < th dose independent rect. 20 10
964 408.18 temperature 20 1440 > th dose independent rect. 21 10
970 408.27 humidity 60 43200 < th dose independent rect. 21 7
981 408.39 temperature 20 1440 < th dose independent rect. 21 10
983 408.41 radiation 10 4320 > th dose dependent rect. 17 1