Os03g0165900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os03g0165900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 635.16 | 1.18 | 9.52 | 3.15 | 1.66 | 3.95 | 2.7 | 0.201 | -1.52 | 15 | 10.2 | 1449 | 16.9 | 2.4 |
| 634.89 | 1.17 | 9.52 | 3.12 | 1.66 | 3.96 | 2.66 | -- | -1.53 | 14.9 | 10.27 | 1451 | 16.8 | 2.62 |
| 658.93 | 1.2 | 9.52 | 3.2 | 1.67 | 3.95 | -- | 0.173 | -1.52 | 15 | 10.24 | 1450 | 16.8 | 2.65 |
| 658.81 | 1.2 | 9.51 | 3.18 | 1.67 | 3.96 | -- | -- | -1.51 | 15.1 | 10.17 | 1451 | 16.8 | 2.68 |
| 797.38 | 1.32 | 9.52 | 3.23 | -- | 4.24 | -- | 0.167 | -1.55 | -- | 7.075 | 1485 | 16.3 | 3 |
| 897.23 | 1.4 | 9.4 | 4.09 | 1.59 | -- | 2.5 | -- | -0.995 | 15.1 | -- | -- | -- | -- |
| 917.35 | 1.42 | 9.4 | 4.14 | 1.61 | -- | -- | -- | -0.979 | 15.3 | -- | -- | -- | -- |
| 792.13 | 1.31 | 9.52 | 3.09 | -- | 4.39 | -- | -- | -1.45 | -- | 9.293 | 1503 | 15.4 | 3.78 |
| 906.79 | 1.4 | 9.51 | -- | 1.73 | 5 | -- | -- | -1.92 | 15 | 9.6 | 1448 | 16.7 | 3.15 |
| 1063.93 | 1.52 | 9.4 | 4.07 | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
| 1368.56 | 1.73 | 9.5 | -- | 1.53 | -- | -- | -- | -1.44 | 15.3 | -- | -- | -- | -- |
| 1030.77 | 1.5 | 9.47 | -- | -- | 5.31 | -- | -- | -1.71 | -- | 8.969 | 1488 | 15.4 | 3.9 |
| 1500.73 | 1.81 | 9.5 | -- | -- | -- | -- | -- | -1.47 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 612.06 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 2 | 616.26 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 3 | 622.68 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 4 | 622.88 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 18 | 626.41 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 20 | 629.87 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 38 | 635.20 | humidity | 50 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 42 | 637.49 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 61 | 638.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 75 | 642.70 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 11 |
| 122 | 644.89 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 154 | 647.33 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 156 | 647.34 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 160 | 647.48 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 164 | 647.65 | humidity | 60 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 238 | 649.46 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 4 |
| 252 | 649.83 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 14 |
| 263 | 650.15 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 1 |
| 337 | 651.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 21 |
| 381 | 652.61 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 392 | 652.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 394 | 652.88 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 396 | 652.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 438 | 653.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 550 | 656.20 | temperature | 30 | 1440 | < th | dose dependent | sin | 20 | NA |
| 555 | 656.29 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 576 | 656.68 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 611 | 657.11 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 617 | 657.37 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 638 | 657.71 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 642 | 657.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 676 | 658.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 681 | 658.66 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 703 | 659.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 708 | 659.19 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 729 | 659.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 750 | 659.72 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 761 | 659.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 23 |
| 785 | 660.36 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 799 | 660.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 5 |