Os03g0165400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Relative to SR12 protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
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Os03g0165400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Relative to SR12 protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 920.11 | 1.43 | 2.92 | 13.9 | 0.329 | -16.6 | 1.91 | 176 | -1.13 | 6.27 | 30.1 | 761 | 18 | 3.09 |
| 1097.49 | 1.55 | 4.83 | -3.25 | 1.13 | 1.92 | 2.83 | -- | -1.37 | 4.95 | 30.1 | 761 | 18 | 3.09 |
| 924.19 | 1.42 | 2.92 | 14 | 0.443 | -16.8 | -- | 178 | -1.15 | 3.62 | 30.1 | 768 | 18 | 9.36 |
| 940 | 1.43 | 4.78 | -3.57 | 0.512 | 2.36 | -- | -- | -1.08 | 4.47 | 27.71 | 920 | 17.7 | 3.65 |
| 932.31 | 1.42 | 2.86 | 14.4 | -- | -16.8 | -- | 179 | -1.11 | -- | 30.1 | 838 | 18 | 12.4 |
| 1108.03 | 1.56 | 4.83 | -3.22 | 1.06 | -- | 2.61 | -- | -1.39 | 4.84 | -- | -- | -- | -- |
| 1122.97 | 1.57 | 4.85 | -3.24 | 1.09 | -- | -- | -- | -1.41 | 4.11 | -- | -- | -- | -- |
| 948.48 | 1.43 | 4.78 | -3.66 | -- | 2.59 | -- | -- | -1.07 | -- | 27.07 | 912 | 17.7 | 4.97 |
| 1274.58 | 1.66 | 4.7 | -- | 0.483 | 2 | -- | -- | -0.762 | 5.3 | 26.9 | 733 | 17.8 | 4.58 |
| 1187.44 | 1.61 | 4.85 | -3.19 | -- | -- | -- | -- | -1.38 | -- | -- | -- | -- | -- |
| 1398.85 | 1.75 | 4.76 | -- | 1.03 | -- | -- | -- | -1.05 | 4.17 | -- | -- | -- | -- |
| 1281.73 | 1.67 | 4.72 | -- | -- | 2.22 | -- | -- | -0.785 | -- | 26.42 | 692 | 18.5 | 4.57 |
| 1456.07 | 1.78 | 4.77 | -- | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 922.38 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 17 | 929.22 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 3 |
| 19 | 932.28 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 14 |
| 34 | 932.78 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 16 |
| 35 | 933.67 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 39 | 936.00 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 16 |
| 41 | 936.17 | humidity | 70 | 720 | < th | dose independent | rect. | 18 | 2 |
| 55 | 939.08 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 97 | 939.63 | wind | 1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 98 | 940.54 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 99 | 940.64 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 100 | 940.69 | temperature | 30 | 720 | > th | dose independent | rect. | 18 | 1 |
| 116 | 941.45 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 118 | 941.83 | wind | 1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 120 | 942.35 | humidity | 70 | 720 | < th | dose independent | sin | 12 | NA |
| 122 | 942.42 | radiation | 20 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 123 | 942.43 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 16 |
| 129 | 943.18 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 144 | 943.86 | radiation | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 145 | 943.88 | humidity | 50 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 146 | 944.03 | humidity | 70 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 148 | 944.59 | humidity | 50 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 187 | 947.62 | radiation | 10 | 1440 | > th | dose dependent | rect. | 15 | 18 |
| 208 | 948.24 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 225 | 951.03 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 232 | 951.42 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 239 | 952.07 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 243 | 952.44 | radiation | 30 | 4320 | < th | dose independent | rect. | 2 | 6 |
| 250 | 952.83 | radiation | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 301 | 955.67 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 19 |
| 437 | 958.59 | temperature | 30 | 1440 | > th | dose dependent | rect. | 17 | 17 |
| 438 | 958.61 | humidity | 70 | 1440 | < th | dose dependent | rect. | 16 | 18 |
| 459 | 959.77 | humidity | 50 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 523 | 960.68 | temperature | 30 | 1440 | > th | dose dependent | sin | 12 | NA |
| 533 | 961.00 | radiation | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 543 | 961.30 | humidity | 70 | 1440 | < th | dose dependent | sin | 11 | NA |
| 579 | 961.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 11 |
| 624 | 962.28 | radiation | 40 | 1440 | < th | dose dependent | sin | 11 | NA |
| 725 | 963.74 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 9 |
| 764 | 964.23 | wind | 1 | 1440 | < th | dose independent | rect. | 4 | 2 |
| 765 | 964.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 3 |
| 774 | 964.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 15 |
| 863 | 965.90 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 1 |