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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0165200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0373) R2 : 0.00103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.054 (0.0786) R2dN8 : 0.00133 R2N8 : 0.00103
σ : 0.703
deviance : 226.86
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
199.65 0.664 2.9 0.00243 0.106 2.25 -0.47 -8.34 0.0757 18.4 92.13 114 20.2 0.0998
214.89 0.683 2.9 -0.00704 0.104 2.25 -0.537 -- 0.0797 19.3 92.08 116 20.2 0.0991
200.06 0.659 2.9 0.0179 0.0953 2.16 -- -8.87 0.0707 18.5 92.33 114 20.2 0.0329
214.51 0.682 2.9 -0.0138 0.101 2.41 -- -- 0.0679 18.6 92.13 113 20.2 0.033
200.61 0.66 2.9 0.0053 -- 2.19 -- -8.83 0.0722 -- 92.28 115 20.2 0.0332
224.55 0.703 2.9 -0.0388 0.135 -- -0.702 -- 0.0547 19.4 -- -- -- --
225.89 0.704 2.9 -0.0234 0.133 -- -- -- 0.0533 19.5 -- -- -- --
215.03 0.683 2.89 -0.0157 -- 2.44 -- -- 0.0658 -- 92.35 113 20.1 0.0181
214.51 0.682 2.9 -- 0.101 2.41 -- -- 0.0691 18.6 92.14 113 20.2 0.00282
226.84 0.704 2.9 -0.0255 -- -- -- -- 0.0511 -- -- -- -- --
225.9 0.703 2.9 -- 0.134 -- -- -- 0.0559 19.4 -- -- -- --
215.04 0.683 2.89 -- -- 2.44 -- -- 0.0676 -- 92.18 111 20.2 0.0126
226.86 0.703 2.9 -- -- -- -- -- 0.054 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 202.60 atmosphere 1005 90 < th dose independent rect. 20 1
11 208.64 humidity 90 90 > th dose dependent rect. 20 1
16 209.58 humidity 90 10 > th dose dependent rect. 22 1
21 210.04 wind 7 10 > th dose dependent rect. 12 1
31 212.22 atmosphere 1005 30 < th dose dependent rect. 21 1
33 212.24 humidity 90 10 > th dose independent rect. 22 1
55 213.10 wind 7 10 > th dose independent rect. 12 1
62 213.87 atmosphere 1000 90 < th dose independent rect. 20 12
64 214.12 atmosphere 1015 30 < th dose dependent rect. 21 11
66 214.20 atmosphere 1000 720 < th dose independent rect. 21 1
67 214.20 atmosphere 1000 10 < th dose independent rect. 21 12
69 214.21 wind 7 30 > th dose independent rect. 17 1
74 214.32 atmosphere 1000 10 < th dose independent rect. 7 1
82 214.32 atmosphere 1000 10 < th dose dependent rect. 7 1
92 214.34 humidity 70 10 < th dose independent rect. 7 1
155 214.34 humidity 70 10 < th dose dependent rect. 7 1
218 214.35 atmosphere 1000 720 > th dose independent rect. 18 5
219 214.36 wind 1 10 < th dose dependent rect. 7 1
220 214.39 wind 1 10 < th dose independent rect. 7 1
230 214.48 atmosphere 1000 270 > th dose independent rect. 18 13
235 214.59 atmosphere 1005 10 < th dose dependent rect. 21 12
258 215.11 atmosphere 1000 720 > th dose independent rect. 18 7
263 215.14 atmosphere 1005 720 < th dose dependent rect. 21 1
291 215.46 humidity 90 90 > th dose dependent rect. 14 8
297 215.52 atmosphere 1015 720 < th dose dependent rect. 21 1
308 215.61 atmosphere 1000 90 < th dose independent rect. 20 8
331 215.82 atmosphere 1005 30 < th dose dependent rect. 21 8
332 215.83 wind 7 30 > th dose dependent rect. 17 1
346 215.92 atmosphere 1000 10 < th dose independent rect. 21 8
352 215.95 atmosphere 1000 720 < th dose independent rect. 17 7
381 216.08 temperature 25 90 < th dose dependent rect. 16 1
396 216.16 atmosphere 1000 90 < th dose independent sin 10 NA
400 216.16 atmosphere 1000 90 < th dose independent rect. 20 16
404 216.17 atmosphere 1005 30 > th dose dependent rect. 17 1
409 216.20 atmosphere 1000 90 > th dose independent sin 11 NA
415 216.22 atmosphere 1000 10 > th dose independent sin 10 NA
447 216.35 atmosphere 1000 270 > th dose independent rect. 22 13
455 216.37 atmosphere 1000 90 > th dose independent rect. 19 10
479 216.45 atmosphere 1000 720 > th dose independent rect. 23 2
523 216.61 atmosphere 1000 10 < th dose independent rect. 21 15
525 216.62 atmosphere 1000 720 > th dose independent rect. 22 6
563 216.70 radiation 1 90 < th dose dependent rect. 22 23
574 216.73 atmosphere 1005 270 < th dose dependent sin 11 NA
592 216.76 atmosphere 1005 10 < th dose dependent rect. 21 15
599 216.79 atmosphere 1005 10 < th dose dependent sin 9 NA
607 216.80 atmosphere 1000 90 > th dose independent rect. 19 16
651 216.90 radiation 20 30 > th dose dependent rect. 7 1
671 216.91 humidity 90 30 > th dose dependent rect. 9 14
728 217.07 atmosphere 1000 30 > th dose independent rect. 19 22
749 217.12 atmosphere 995 90 > th dose dependent rect. 18 11
754 217.13 temperature 10 30 > th dose dependent rect. 21 11
762 217.15 atmosphere 1005 90 > th dose independent rect. 7 22
774 217.18 temperature 20 10 > th dose independent rect. 21 2
836 217.26 wind 7 30 > th dose independent rect. 17 15
967 217.45 temperature 25 90 > th dose dependent rect. 2 5
971 217.46 atmosphere 1000 270 > th dose independent rect. 16 11
1000 217.50 atmosphere 1000 10 > th dose independent rect. 7 23