Os03g0165100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0165100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 159.22 | 0.593 | 5.77 | -1.42 | 0.486 | -2.61 | -0.0265 | -0.898 | -0.487 | 1.76 | 27.76 | 27 | -- | -- |
| 160.05 | 0.589 | 5.79 | -1.57 | 0.439 | -2.57 | -0.358 | -- | -0.52 | 1.83 | 27.61 | 47 | -- | -- |
| 159.11 | 0.592 | 5.77 | -1.38 | 0.483 | -2.58 | -- | -0.999 | -0.474 | 1.43 | 27.61 | 26 | -- | -- |
| 160.47 | 0.59 | 5.79 | -1.57 | 0.451 | -2.58 | -- | -- | -0.521 | 2.03 | 27.69 | 47 | -- | -- |
| 165.13 | 0.598 | 5.75 | -1.33 | -- | -2.37 | -- | -1.06 | -0.417 | -- | 26.14 | 101 | -- | -- |
| 252.97 | 0.746 | 5.66 | -0.953 | 0.32 | -- | 0.533 | -- | 0.0361 | 14.5 | -- | -- | -- | -- |
| 253.93 | 0.746 | 5.66 | -0.939 | 0.326 | -- | -- | -- | 0.0397 | 14.9 | -- | -- | -- | -- |
| 166.8 | 0.602 | 5.77 | -1.5 | -- | -2.29 | -- | -- | -0.458 | -- | 26.48 | 99 | -- | -- |
| 217.76 | 0.691 | 5.72 | -- | 0.266 | -1.93 | -- | -- | -0.223 | 0.78 | 27.69 | 47 | -- | -- |
| 260.05 | 0.754 | 5.66 | -0.953 | -- | -- | -- | -- | 0.0313 | -- | -- | -- | -- | -- |
| 277.18 | 0.779 | 5.64 | -- | 0.344 | -- | -- | -- | 0.144 | 14.9 | -- | -- | -- | -- |
| 221.13 | 0.695 | 5.71 | -- | -- | -1.71 | -- | -- | -0.178 | -- | 27.69 | 47 | -- | -- |
| 284.01 | 0.787 | 5.64 | -- | -- | -- | -- | -- | 0.137 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.92 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 19 | 163.62 | temperature | 25 | 10 | < th | dose dependent | sin | 1 | NA |
| 22 | 164.12 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 23 | 164.18 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 28 | 164.43 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 30 | 164.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 35 | 164.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 38 | 164.81 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 41 | 165.14 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 43 | 165.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 44 | 165.27 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 45 | 165.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 48 | 165.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 73 | 166.48 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 77 | 166.61 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 78 | 166.61 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 94 | 167.12 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 95 | 167.13 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 97 | 167.23 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 7 |
| 138 | 168.03 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 155 | 168.21 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 162 | 168.29 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 2 |
| 169 | 168.42 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 209 | 169.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 294 | 169.82 | temperature | 25 | 4320 | < th | dose dependent | sin | 12 | NA |
| 435 | 171.27 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 442 | 171.36 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 475 | 171.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 515 | 171.75 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 530 | 171.87 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 565 | 172.02 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 11 |
| 588 | 172.14 | temperature | 25 | 1440 | < th | dose dependent | sin | 7 | NA |
| 686 | 172.54 | temperature | 25 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 770 | 172.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 810 | 173.02 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 906 | 173.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 13 |
| 930 | 173.42 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 13 |