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Os03g0164700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : PfkB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0142) R2 : 0.0705
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.176 (0.03) R2dN8 : 0.091 R2N8 : 0.0705
σ : 0.268
deviance : 32.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
11.8 0.161 11.9 0.341 0.409 0.167 0.211 -0.0143 -0.192 16.2 25.74 45 -- --
11.8 0.16 11.9 0.345 0.409 0.167 0.205 -- -0.191 16.2 25.75 45 -- --
11.9 0.161 11.9 0.361 0.407 0.166 -- 0.0655 -0.185 16.2 25.8 45 -- --
11.91 0.161 11.9 0.346 0.408 0.17 -- -- -0.191 16.2 25.76 45 -- --
17.67 0.196 11.9 0.287 -- 0.354 -- 0.0913 -0.259 -- 25.8 68 -- --
13.32 0.171 11.9 0.394 0.535 -- 0.266 -- -0.122 16 -- -- -- --
13.52 0.172 11.9 0.397 0.536 -- -- -- -0.12 16 -- -- -- --
17.35 0.194 11.9 0.279 -- 0.374 -- -- -0.249 -- 25.89 155 -- --
15.07 0.181 11.9 -- 0.407 0.191 -- -- -0.21 16.2 25.7 45 -- --
29.26 0.253 11.9 0.375 -- -- -- -- -0.135 -- -- -- -- --
17.68 0.197 11.9 -- 0.529 -- -- -- -0.165 16 -- -- -- --
19.36 0.205 11.9 -- -- 0.396 -- -- -0.286 -- 25.8 158 -- --
32.98 0.268 11.9 -- -- -- -- -- -0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 11.65 temperature 10 270 > th dose dependent rect. 5 19
15 11.89 temperature 25 270 < th dose independent rect. 24 20
22 11.94 wind 1 14400 < th dose dependent rect. 2 1
28 11.96 temperature 25 30 > th dose dependent rect. 19 23
31 11.98 temperature 25 90 < th dose independent rect. 3 19
33 11.99 temperature 15 10 > th dose dependent rect. 6 18
34 11.99 temperature 15 10 > th dose dependent rect. 6 21
47 12.03 temperature 25 10 > th dose dependent sin 8 NA
49 12.03 temperature 20 10 > th dose dependent rect. 6 16
55 12.04 wind 1 14400 < th dose independent rect. 2 1
68 12.05 temperature 25 30 > th dose dependent rect. 19 15
72 12.06 atmosphere 1005 270 > th dose independent rect. 24 19
73 12.06 temperature 30 270 < th dose independent rect. 9 20
77 12.07 temperature 30 90 < th dose independent rect. 3 12
78 12.07 temperature 30 90 < th dose independent rect. 3 16
80 12.07 humidity 60 10 > th dose independent rect. 10 20
83 12.07 wind 9 90 < th dose dependent rect. 5 22
84 12.08 temperature 30 270 < th dose independent rect. 24 14
88 12.08 atmosphere 1000 270 > th dose independent rect. 6 23
131 12.12 temperature 25 90 > th dose independent rect. 5 17
132 12.12 humidity 70 90 > th dose independent rect. 11 18
136 12.12 wind 9 270 < th dose dependent rect. 3 21
142 12.13 temperature 15 30 > th dose independent rect. 10 19
144 12.13 humidity 70 270 > th dose independent rect. 9 20
153 12.14 atmosphere 1010 10 < th dose independent rect. 6 4
164 12.15 wind 1 14400 > th dose independent rect. 2 1
172 12.15 radiation 40 270 < th dose independent rect. 9 20
184 12.16 atmosphere 1000 90 > th dose independent rect. 10 19
189 12.16 atmosphere 995 270 > th dose dependent rect. 24 19
191 12.16 temperature 30 270 < th dose dependent rect. 24 20
193 12.17 humidity 80 720 > th dose independent rect. 20 5
201 12.17 temperature 25 90 > th dose independent rect. 5 22
202 12.17 temperature 25 90 > th dose independent rect. 19 23
205 12.17 wind 9 270 < th dose dependent rect. 5 12
216 12.18 temperature 15 90 > th dose independent rect. 21 8
217 12.18 temperature 15 720 > th dose independent rect. 10 9
248 12.19 atmosphere 1015 90 < th dose dependent rect. 5 6
252 12.20 wind 3 270 < th dose independent rect. 5 4
254 12.20 temperature 30 270 < th dose independent rect. 9 10
258 12.20 temperature 25 270 > th dose independent rect. 3 19
263 12.20 wind 7 90 < th dose independent rect. 5 22
264 12.20 wind 5 270 < th dose dependent rect. 5 4
269 12.20 temperature 30 90 < th dose dependent rect. 3 18
270 12.20 radiation 40 90 < th dose dependent rect. 11 18
277 12.20 temperature 25 30 > th dose dependent rect. 11 23
278 12.20 temperature 25 10 > th dose dependent rect. 17 23
293 12.21 wind 3 90 < th dose independent rect. 5 22
294 12.21 temperature 25 90 > th dose independent rect. 24 23
295 12.21 temperature 10 720 > th dose dependent rect. 5 11
297 12.21 wind 9 270 < th dose dependent rect. 5 16
299 12.21 atmosphere 995 90 > th dose dependent rect. 3 16
303 12.21 temperature 25 270 > th dose dependent rect. 17 17
322 12.22 temperature 25 270 > th dose dependent rect. 6 1
349 12.23 temperature 15 270 > th dose independent rect. 8 21
351 12.23 radiation 1 270 < th dose independent rect. 21 22
352 12.23 atmosphere 1015 270 < th dose dependent rect. 5 4
356 12.23 temperature 15 30 > th dose dependent rect. 6 12
363 12.23 atmosphere 995 270 > th dose dependent rect. 24 16
381 12.24 temperature 30 720 < th dose independent rect. 10 2
386 12.24 wind 5 270 < th dose independent rect. 19 14
387 12.24 radiation 30 720 < th dose independent rect. 17 16
432 12.24 temperature 25 10 > th dose dependent rect. 8 23
433 12.25 temperature 15 720 > th dose independent rect. 16 6
434 12.25 atmosphere 1010 90 < th dose independent rect. 21 8
440 12.25 wind 3 90 < th dose independent rect. 5 18
447 12.25 wind 5 270 < th dose independent rect. 3 21
450 12.25 temperature 25 10 > th dose dependent no NA NA
453 12.25 wind 9 270 < th dose dependent rect. 19 14
474 12.25 radiation 10 270 < th dose dependent rect. 8 21
503 12.26 temperature 25 90 > th dose independent rect. 14 23
506 12.26 atmosphere 1015 270 < th dose dependent rect. 5 2
538 12.26 temperature 25 10 > th dose dependent rect. 15 23
540 12.27 temperature 15 720 > th dose independent rect. 17 2
541 12.27 humidity 50 1440 > th dose independent rect. 6 5
548 12.27 temperature 25 90 > th dose independent rect. 19 15
578 12.27 atmosphere 995 10 > th dose dependent rect. 3 14
604 12.27 radiation 40 10 < th dose dependent rect. 10 20
624 12.28 wind 7 270 < th dose independent rect. 13 11
625 12.28 wind 5 90 < th dose independent rect. 5 12
626 12.28 temperature 15 270 > th dose independent rect. 17 12
629 12.28 wind 9 720 < th dose independent rect. 19 15
639 12.28 radiation 40 720 < th dose independent rect. 17 18
677 12.28 atmosphere 1015 270 < th dose dependent rect. 5 19
680 12.28 atmosphere 1015 10 < th dose dependent rect. 8 20
682 12.28 radiation 40 270 < th dose dependent rect. 9 20
693 12.28 temperature 25 10 > th dose dependent rect. 13 23
698 12.29 temperature 25 270 > th dose independent rect. 4 5
699 12.29 atmosphere 1005 720 > th dose independent rect. 24 5
700 12.29 temperature 30 720 < th dose independent rect. 7 6
702 12.29 wind 7 720 < th dose independent rect. 22 9
718 12.29 atmosphere 1005 720 > th dose independent rect. 16 19
723 12.29 wind 5 270 < th dose independent rect. 13 21
729 12.29 temperature 25 90 > th dose independent rect. 11 23
750 12.29 atmosphere 1015 90 < th dose dependent rect. 8 17
763 12.29 humidity 50 10 > th dose dependent rect. 10 20
764 12.29 temperature 25 270 > th dose dependent rect. 16 21
765 12.29 temperature 25 30 > th dose dependent rect. 19 21
773 12.30 temperature 25 90 > th dose independent no NA NA
779 12.30 wind 3 270 < th dose independent rect. 4 10
785 12.30 wind 5 14400 < th dose independent rect. 19 14
790 12.30 wind 3 90 < th dose independent rect. 5 16
813 12.30 atmosphere 1015 10 < th dose dependent rect. 6 4
833 12.30 atmosphere 1015 10 < th dose dependent rect. 8 16
860 12.31 temperature 25 270 > th dose independent rect. 5 2
862 12.31 temperature 10 1440 > th dose independent rect. 6 5
865 12.31 atmosphere 995 1440 > th dose independent rect. 6 5
871 12.31 wind 5 14400 > th dose independent rect. 19 13
875 12.31 radiation 40 270 < th dose independent rect. 24 14
884 12.31 temperature 10 1440 > th dose independent rect. 11 19
926 12.31 humidity 50 90 > th dose dependent rect. 10 19
944 12.32 wind 5 14400 > th dose independent rect. 19 11
945 12.32 wind 5 14400 < th dose independent rect. 19 11
958 12.32 wind 9 720 < th dose independent rect. 14 17