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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0164300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Transcriptional factor B3 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.77 (0.0485) R2 : 0.725
β1 : -2.71 (0.184) R2dD : 0.147 R2D : 0.209
β2 : 2.49 (0.117) R2dC : 0.274 R2C : 0.221
β3 : 1.99 (0.152) R2dE : 0.111 R2E : 0.106
β4 : -2.2 (0.464) R2dD*C : 0.0136 R2D*C : -0.0184
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.4 (0.104) R2dN8 : 0.148 R2N8 : 0.152
σ : 0.905
deviance : 377.88
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_____
C
peak time of C : 1.9
E
wheather : humidity
threshold : 71.21
memory length : 1434
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18.1
open length of G : 19.3

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
378.44 0.914 4.77 -2.68 2.49 1.99 -2.19 -0.107 1.38 1.89 71 1434 18.1 18.9
377.88 0.905 4.77 -2.71 2.49 1.99 -2.2 -- 1.4 1.9 71.21 1434 18.1 19.3
396.25 0.927 4.77 -2.62 2.52 2.03 -- 0.004 1.4 1.84 71.2 1429 18.1 19.3
396.16 0.927 4.76 -2.62 2.53 2.06 -- -- 1.42 1.82 71.21 1424 18.1 19.3
557.96 1.11 4.87 -3.31 -- 1.74 -- -1.91 0.859 -- 71.3 1614 16.1 17.2
518.87 1.07 4.81 -3.33 2.42 -- -2.68 -- 1.21 1.88 -- -- -- --
546.37 1.09 4.8 -3.25 2.42 -- -- -- 1.22 1.78 -- -- -- --
482.25 1.02 4.9 -2.98 -- 3.97 -- -- 0.8 -- 66 1670 15.4 16.3
554.77 1.1 4.79 -- 2.54 2.6 -- -- 1.48 1.74 70 1437 18.4 18.2
901.21 1.4 4.78 -3.15 -- -- -- -- 1.28 -- -- -- -- --
823.98 1.34 4.72 -- 2.36 -- -- -- 1.59 1.74 -- -- -- --
739.52 1.27 4.95 -- -- 3.84 -- -- 0.986 -- 67 1724 15.1 15.6
1162.41 1.59 4.7 -- -- -- -- -- 1.63 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 379.40 humidity 70 1440 > th dose independent rect. 18 19
3 382.55 humidity 70 1440 < th dose independent rect. 18 19
8 385.01 humidity 70 1440 > th dose independent rect. 9 4
14 385.98 humidity 70 1440 > th dose independent sin 8 NA
15 386.67 humidity 70 1440 > th dose independent rect. 4 9
16 386.68 humidity 70 1440 > th dose independent rect. 2 11
22 386.86 humidity 70 1440 > th dose independent rect. 22 15
26 387.01 humidity 70 1440 < th dose independent rect. 9 4
34 388.33 humidity 70 1440 < th dose independent sin 8 NA
35 388.46 humidity 70 1440 < th dose independent rect. 6 7
60 388.88 humidity 80 1440 < th dose dependent rect. 24 13
61 388.96 humidity 80 1440 < th dose dependent sin 7 NA
132 393.68 humidity 50 1440 > th dose dependent rect. 4 10
352 400.21 humidity 60 1440 > th dose dependent rect. 11 1
404 402.03 humidity 50 1440 > th dose dependent sin 3 NA
414 402.45 humidity 70 1440 < th dose independent no NA NA
415 402.45 humidity 70 1440 < th dose independent rect. 6 14
500 402.76 humidity 70 1440 > th dose independent rect. 4 17
501 402.76 humidity 70 1440 > th dose independent rect. 4 19
502 402.77 humidity 70 1440 > th dose independent rect. 2 19
505 402.77 humidity 70 1440 > th dose independent rect. 2 21
538 402.85 humidity 70 1440 > th dose independent rect. 22 23
544 402.87 humidity 70 1440 > th dose independent no NA NA