Os03g0163200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF247, plant family protein.
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Os03g0163200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF247, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.02 | 0.393 | 10.2 | -2.23 | 1.13 | -1.06 | -1.37 | 1.93 | -0.288 | 22.4 | 24.58 | 87 | -- | -- |
| 71.56 | 0.394 | 10.2 | -2.48 | 1.15 | -0.867 | -1.48 | -- | -0.359 | 22.6 | 24.4 | 103 | -- | -- |
| 77.03 | 0.409 | 10.2 | -2.08 | 1.14 | -1.02 | -- | 2.66 | -0.257 | 22.7 | 24.36 | 82 | -- | -- |
| 80.15 | 0.417 | 10.2 | -2.44 | 1.2 | -0.778 | -- | -- | -0.366 | 22.8 | 24.36 | 149 | -- | -- |
| 139.09 | 0.552 | 10.1 | -1.86 | -- | -1.69 | -- | 3.84 | -0.154 | -- | 24.36 | 82 | -- | -- |
| 84.41 | 0.431 | 10.3 | -2.62 | 1.3 | -- | -1.16 | -- | -0.45 | 23.6 | -- | -- | -- | -- |
| 90.08 | 0.444 | 10.3 | -2.57 | 1.3 | -- | -- | -- | -0.447 | 23.8 | -- | -- | -- | -- |
| 146.66 | 0.567 | 10.2 | -2.32 | -- | -1.43 | -- | -- | -0.264 | -- | 23.86 | 10 | -- | -- |
| 214.68 | 0.682 | 10.1 | -- | 1.56 | -1.7 | -- | -- | 0.0753 | 23.7 | 14.4 | 1049 | -- | -- |
| 196.53 | 0.655 | 10.2 | -2.54 | -- | -- | -- | -- | -0.431 | -- | -- | -- | -- | -- |
| 264.77 | 0.761 | 10.2 | -- | 1.27 | -- | -- | -- | -0.16 | 23.7 | -- | -- | -- | -- |
| 234.45 | 0.713 | 10 | -- | -- | -1.85 | -- | -- | 0.403 | -- | -6.302 | 47520 | -- | -- |
| 366.21 | 0.893 | 10.2 | -- | -- | -- | -- | -- | -0.149 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.09 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 2 | 67.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 8 |
| 8 | 67.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 14 |
| 31 | 67.84 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 62 | 68.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 13 |
| 97 | 68.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 7 |
| 117 | 69.04 | temperature | 25 | 90 | > th | dose dependent | rect. | 4 | 17 |
| 197 | 69.58 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 7 |
| 200 | 69.58 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 13 |
| 271 | 69.87 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 325 | 70.02 | temperature | 25 | 90 | > th | dose dependent | rect. | 11 | 23 |
| 333 | 70.08 | temperature | 25 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 343 | 70.12 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 452 | 70.50 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 2 |
| 509 | 70.65 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 516 | 70.66 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 11 |
| 569 | 70.76 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 573 | 70.77 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 602 | 70.85 | temperature | 25 | 720 | > th | dose independent | rect. | 4 | 8 |
| 615 | 70.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 15 |
| 617 | 70.89 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 14 |
| 638 | 70.94 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 5 |
| 714 | 71.15 | temperature | 20 | 720 | > th | dose independent | sin | 4 | NA |
| 737 | 71.21 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 13 |
| 743 | 71.23 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 13 |
| 765 | 71.29 | temperature | 30 | 90 | < th | dose independent | sin | 21 | NA |
| 767 | 71.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 792 | 71.33 | temperature | 30 | 270 | < th | dose independent | sin | 0 | NA |
| 795 | 71.33 | temperature | 25 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 804 | 71.35 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 824 | 71.38 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 10 |
| 909 | 71.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 955 | 71.63 | temperature | 25 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 956 | 71.64 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 984 | 71.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 5 |
| 993 | 71.70 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 1 |