Os03g0163000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, uncharacterized transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0163000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, uncharacterized transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.46 | 0.386 | 7.19 | -1.19 | 1.01 | 0.78 | -0.292 | 0.925 | 0.36 | 0.277 | 67.3 | 4794 | -- | -- |
| 66.93 | 0.381 | 7.18 | -1.09 | 0.988 | 0.803 | -0.267 | -- | 0.439 | 0.355 | 71.01 | 6212 | -- | -- |
| 66.77 | 0.381 | 7.19 | -1.13 | 0.999 | 0.806 | -- | 0.444 | 0.4 | 0.326 | 69.97 | 6212 | -- | -- |
| 67.13 | 0.382 | 7.19 | -1.1 | 1.01 | 0.785 | -- | -- | 0.403 | 0.346 | 71.48 | 6226 | -- | -- |
| 95.89 | 0.459 | 7.23 | -0.98 | -- | 0.875 | -- | 0.0205 | 0.176 | -- | 67.47 | 4561 | -- | -- |
| 77.25 | 0.412 | 7.26 | -0.995 | 1.02 | -- | -0.26 | -- | 0.0944 | 0.678 | -- | -- | -- | -- |
| 77.54 | 0.412 | 7.26 | -0.985 | 1.02 | -- | -- | -- | 0.0956 | 0.703 | -- | -- | -- | -- |
| 95.89 | 0.458 | 7.23 | -0.979 | -- | 0.875 | -- | -- | 0.176 | -- | 67.47 | 4561 | -- | -- |
| 93.96 | 0.451 | 7.17 | -- | 1.04 | 0.684 | -- | -- | 0.467 | 0.497 | 74.31 | 18083 | -- | -- |
| 142.4 | 0.558 | 7.24 | -0.949 | -- | -- | -- | -- | 0.114 | -- | -- | -- | -- | -- |
| 103.11 | 0.475 | 7.24 | -- | 1 | -- | -- | -- | 0.205 | 0.657 | -- | -- | -- | -- |
| 121.18 | 0.514 | 7.21 | -- | -- | 0.86 | -- | -- | 0.283 | -- | 67.47 | 4561 | -- | -- |
| 166.13 | 0.602 | 7.22 | -- | -- | -- | -- | -- | 0.219 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 63.90 | humidity | 90 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 13 | 65.58 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 14 | 65.59 | humidity | 90 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 19 | 65.86 | wind | 1 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 21 | 65.88 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 8 |
| 27 | 66.21 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 8 |
| 40 | 66.49 | humidity | 90 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 41 | 66.53 | humidity | 80 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 47 | 66.70 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 17 |
| 50 | 66.71 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 57 | 66.82 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 20 |
| 64 | 66.91 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 68 | 66.95 | atmosphere | 1000 | 90 | > th | dose dependent | rect. | 17 | 16 |
| 69 | 66.99 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 4 |
| 71 | 67.00 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 77 | 67.06 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 109 | 67.30 | atmosphere | 1005 | 90 | > th | dose independent | rect. | 17 | 16 |
| 113 | 67.32 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 148 | 67.51 | wind | 1 | 14400 | > th | dose independent | rect. | 21 | 13 |
| 152 | 67.52 | humidity | 90 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 158 | 67.56 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 15 |
| 163 | 67.59 | wind | 1 | 14400 | > th | dose independent | sin | 10 | NA |
| 180 | 67.64 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 15 | 19 |
| 188 | 67.66 | humidity | 80 | 14400 | > th | dose dependent | rect. | 9 | 10 |
| 201 | 67.68 | humidity | 80 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 222 | 67.71 | humidity | 90 | 4320 | > th | dose dependent | sin | 0 | NA |
| 238 | 67.75 | humidity | 90 | 14400 | > th | dose independent | rect. | 6 | 16 |
| 299 | 67.85 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 317 | 67.88 | humidity | 70 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 364 | 67.96 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 386 | 67.99 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 15 |
| 390 | 68.00 | wind | 1 | 14400 | < th | dose independent | sin | 11 | NA |
| 410 | 68.02 | wind | 1 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 444 | 68.07 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 454 | 68.08 | humidity | 90 | 14400 | < th | dose independent | rect. | 7 | 15 |
| 472 | 68.09 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 6 |
| 516 | 68.13 | humidity | 90 | 14400 | > th | dose dependent | sin | 21 | NA |
| 525 | 68.14 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 528 | 68.14 | humidity | 80 | 4320 | < th | dose independent | rect. | 9 | 13 |
| 564 | 68.17 | humidity | 80 | 14400 | > th | dose independent | sin | 0 | NA |
| 572 | 68.17 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 10 |
| 584 | 68.18 | atmosphere | 1005 | 10 | > th | dose independent | rect. | 17 | 17 |
| 594 | 68.19 | humidity | 80 | 14400 | < th | dose independent | sin | 0 | NA |
| 656 | 68.24 | humidity | 90 | 14400 | > th | dose independent | rect. | 12 | 10 |
| 675 | 68.25 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 716 | 68.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 752 | 68.29 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 20 |
| 764 | 68.31 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 777 | 68.31 | wind | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 780 | 68.31 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 8 |
| 809 | 68.33 | humidity | 90 | 14400 | > th | dose independent | sin | 21 | NA |
| 836 | 68.34 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 839 | 68.34 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 9 |