FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0162800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-ketoacyl-CoA-synthase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0133) R2 : 0.000117
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00644 (0.0279) R2dN8 : 0.00015 R2N8 : 0.000117
σ : 0.25
deviance : 28.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
25.79 0.239 2.43 -1.07 0.0696 38.4 -0.182 81.5 -0.00039 13.6 15 710 -- --
27.92 0.248 2.93 -0.0413 0.077 -0.0857 -0.284 -- -0.00875 13.4 15 710 -- --
25.92 0.237 2.44 -1.04 0.0694 38.5 -- 81.7 -0.00117 13.5 15.02 680 -- --
26.8 0.243 2.93 -0.00143 0.073 -0.554 -- -- 0.00237 13.3 16.67 75 -- --
26.2 0.238 2.45 -1.03 -- 38.6 -- 81.8 -0.00144 -- 15.03 660 -- --
27.94 0.248 2.93 -0.0449 0.0756 -- -0.274 -- -0.00966 13.4 -- -- -- --
28.24 0.249 2.93 -0.0543 0.0757 -- -- -- -0.0112 13.3 -- -- -- --
27.13 0.244 2.93 -0.00384 -- -0.559 -- -- 0.000958 -- 16.67 72 -- --
26.8 0.242 2.93 -- 0.073 -0.555 -- -- 0.00254 13.3 16.67 75 -- --
28.6 0.25 2.94 -0.0572 -- -- -- -- -0.0128 -- -- -- -- --
28.32 0.249 2.93 -- 0.0766 -- -- -- -0.00518 13.3 -- -- -- --
27.13 0.243 2.93 -- -- -0.561 -- -- 0.00149 -- 16.89 62 -- --
28.68 0.25 2.93 -- -- -- -- -- -0.00644 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.07 temperature 15.0 4320 > th dose independent rect. 15 1
2 25.07 atmosphere 1015.0 1440 < th dose independent rect. 15 1
4 25.42 radiation 1.0 270 < th dose dependent rect. 7 2
5 25.50 wind 5.0 30 > th dose dependent rect. 12 1
7 25.53 radiation 1.0 270 < th dose independent rect. 7 2
17 25.60 wind 7.0 270 > th dose dependent rect. 8 2
34 25.64 wind 9.0 270 > th dose independent rect. 9 1
70 25.66 wind 7.0 270 > th dose dependent rect. 22 12
87 25.72 atmosphere 1015.0 1440 < th dose independent rect. 18 2
90 25.74 temperature 15.0 1440 > th dose independent sin 21 NA
94 25.75 temperature 15.0 720 > th dose independent sin 4 NA
95 25.75 temperature 15.0 720 < th dose independent sin 7 NA
97 25.75 temperature 15.0 720 < th dose independent sin 3 NA
101 25.75 atmosphere 1015.0 1440 > th dose independent rect. 13 2
109 25.75 temperature 15.0 720 < th dose independent rect. 23 6
112 25.75 atmosphere 1015.0 1440 < th dose independent rect. 14 6
116 25.75 atmosphere 1015.0 1440 < th dose independent rect. 12 7
131 25.75 temperature 15.0 720 < th dose independent rect. 1 14
157 25.75 temperature 15.0 1440 < th dose independent rect. 5 19
165 25.75 temperature 15.0 720 < th dose dependent sin 2 NA
172 25.75 temperature 15.0 720 < th dose dependent rect. 1 17
180 25.76 temperature 15.0 1440 < th dose independent sin 21 NA
181 25.76 temperature 15.0 720 < th dose independent sin 1 NA
185 25.76 atmosphere 1015.0 1440 < th dose independent rect. 12 1
187 25.76 temperature 15.0 720 < th dose independent rect. 3 2
202 25.76 atmosphere 1015.0 1440 < th dose independent rect. 12 5
222 25.76 temperature 20.0 10 < th dose independent rect. 9 9
275 25.76 temperature 15.0 720 < th dose dependent sin 21 NA
279 25.76 atmosphere 1015.0 1440 > th dose dependent rect. 12 1
283 25.76 temperature 15.0 720 < th dose dependent rect. 2 3
284 25.76 humidity 90.0 270 > th dose dependent rect. 11 3
315 25.76 temperature 15.0 720 < th dose dependent rect. 23 12
356 25.77 temperature 20.0 10 < th dose independent rect. 9 5
362 25.77 temperature 15.0 720 > th dose independent rect. 5 6
411 25.77 temperature 15.0 720 < th dose dependent rect. 2 1
432 25.77 temperature 20.0 10 < th dose dependent rect. 9 5
454 25.77 temperature 20.0 10 < th dose dependent rect. 3 10
493 25.78 temperature 20.0 90 < th dose independent rect. 9 2
495 25.78 temperature 20.0 10 < th dose independent rect. 9 3
542 25.78 temperature 20.0 10 < th dose dependent rect. 9 3
557 25.79 temperature 15.0 720 > th dose independent no NA NA
559 25.79 temperature 15.0 720 < th dose independent no NA NA
560 25.79 temperature 20.0 720 < th dose independent rect. 10 1
562 25.79 humidity 90.0 720 > th dose independent rect. 11 1
563 25.79 precipitation 0.1 720 > th dose independent rect. 10 1
575 25.79 temperature 15.0 720 < th dose independent rect. 9 15
579 25.79 wind 7.0 30 > th dose independent rect. 19 18
583 25.79 temperature 15.0 720 < th dose independent rect. 9 22
595 25.79 temperature 20.0 720 < th dose dependent rect. 10 1
597 25.79 humidity 90.0 720 > th dose dependent rect. 11 1
598 25.79 precipitation 0.1 720 > th dose dependent rect. 10 1
633 25.80 atmosphere 1015.0 720 < th dose independent rect. 23 9
714 25.81 wind 7.0 10 > th dose independent rect. 11 1
751 25.81 atmosphere 1015.0 1440 < th dose independent rect. 3 17
804 25.82 humidity 90.0 270 > th dose independent rect. 11 3
824 25.82 atmosphere 1015.0 1440 < th dose independent rect. 7 13
885 25.82 atmosphere 1015.0 1440 > th dose dependent rect. 2 17
925 25.83 humidity 90.0 30 > th dose independent rect. 8 4
944 25.83 temperature 15.0 1440 > th dose independent rect. 23 12
953 25.83 atmosphere 1015.0 1440 > th dose independent rect. 3 16
959 25.83 atmosphere 1015.0 720 < th dose independent rect. 23 17
965 25.83 atmosphere 1015.0 1440 > th dose dependent sin 1 NA
967 25.83 temperature 15.0 4320 < th dose dependent rect. 5 1