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Os03g0161900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Heat shock factor 1 (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0333) R2 : 0.888
β1 : -1.84 (0.121) R2dD : 0.059 R2D : 0.0429
β2 : 3.32 (0.0978) R2dC : 0.388 R2C : 0.654
β3 : 2.61 (0.111) R2dE : 0.186 R2E : 0.445
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.443 (0.0712) R2dN8 : 0.013 R2N8 : -0.0125
σ : 0.619
deviance : 176.63
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C
peak time of C : 8.13
E
wheather : temperature
threshold : 15.61
memory length : 9
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.13
open length of G : 9.83

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
175.63 0.623 12 -1.85 3.32 2.6 0.547 0.0674 -0.441 8.12 15.49 10 6.12 9.86
175.63 0.617 12 -1.85 3.32 2.6 0.574 -- -0.441 8.12 15.49 9 6.11 9.86
176.29 0.618 12 -1.85 3.32 2.6 -- 0.419 -0.441 8.12 15.49 9 6.12 9.87
176.63 0.619 12 -1.84 3.32 2.61 -- -- -0.443 8.13 15.61 9 6.13 9.83
323.18 0.837 12 -1.88 -- 4.47 -- 0.714 -0.147 -- 5.458 32 3.72 10.6
257.87 0.753 11.9 -1.66 4.61 -- 0.807 -- -0.204 9.37 -- -- -- --
260.23 0.755 11.9 -1.63 4.61 -- -- -- -0.204 9.37 -- -- -- --
236.27 0.716 12 -1.96 -- 4.36 -- -- -0.374 -- -14.63 326 1.08 11.4
264.95 0.758 11.9 -- 3.4 2.16 -- -- -0.168 8.17 10.8 6 6.62 10.3
1502.12 1.81 12 -1.65 -- -- -- -- -0.186 -- -- -- -- --
330.04 0.85 11.8 -- 4.61 -- -- -- -0.0223 9.4 -- -- -- --
301.85 0.809 12 -- -- 4.51 -- -- -0.128 -- -16.77 395 1.13 10.2
1574.12 1.85 12 -- -- -- -- -- -0.00306 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 178.10 temperature 15.0 10 > th dose dependent rect. 6 10
7 187.16 temperature 30.0 10 < th dose dependent rect. 2 16
8 187.53 temperature 10.0 270 > th dose dependent rect. 4 9
9 188.06 temperature 15.0 10 > th dose dependent rect. 21 19
11 188.82 temperature 15.0 10 > th dose dependent rect. 21 17
17 189.38 temperature 25.0 30 > th dose independent rect. 6 10
19 189.59 temperature 15.0 30 > th dose dependent rect. 6 8
61 194.96 humidity 90.0 10 < th dose independent rect. 6 10
64 195.20 temperature 30.0 10 < th dose dependent sin 3 NA
76 195.71 temperature 20.0 270 > th dose independent rect. 5 9
78 195.79 temperature 25.0 30 > th dose independent rect. 21 19
83 196.00 temperature 25.0 30 < th dose independent rect. 2 17
95 196.37 temperature 20.0 10 > th dose dependent sin 4 NA
97 196.49 temperature 25.0 30 > th dose independent rect. 1 15
105 196.55 radiation 10.0 30 < th dose dependent sin 1 NA
130 197.58 temperature 30.0 10 < th dose dependent rect. 2 13
156 198.35 temperature 25.0 30 > th dose independent rect. 23 17
161 198.48 radiation 20.0 10 < th dose dependent rect. 24 21
162 198.49 temperature 30.0 10 < th dose dependent rect. 2 10
167 198.90 radiation 20.0 10 < th dose dependent rect. 2 19
178 199.35 temperature 30.0 90 < th dose dependent rect. 1 10
219 200.62 temperature 25.0 30 > th dose independent sin 3 NA
242 201.18 radiation 1.0 270 > th dose independent rect. 5 9
258 201.31 temperature 25.0 30 < th dose independent sin 3 NA
284 201.93 radiation 10.0 10 < th dose independent rect. 24 21
300 202.18 radiation 10.0 10 < th dose independent rect. 2 19
303 202.24 temperature 10.0 270 > th dose dependent rect. 18 20
320 202.73 radiation 1.0 30 > th dose independent rect. 6 10
523 205.94 humidity 90.0 30 < th dose independent rect. 6 8
534 206.18 temperature 30.0 270 < th dose independent rect. 18 6
548 206.36 temperature 25.0 30 < th dose independent rect. 2 12
565 206.55 humidity 70.0 270 > th dose independent rect. 18 6
584 206.71 temperature 30.0 10 < th dose dependent rect. 2 8
688 207.80 radiation 1.0 270 < th dose independent rect. 18 6
716 208.12 radiation 20.0 10 < th dose dependent rect. 7 23
746 208.51 radiation 1.0 270 < th dose dependent rect. 18 6
771 208.66 wind 9.0 270 < th dose independent rect. 24 18
795 208.89 humidity 90.0 30 < th dose independent rect. 21 19
807 209.02 radiation 10.0 10 < th dose independent rect. 11 10
827 209.17 precipitation 0.1 270 < th dose independent rect. 5 9
828 209.17 precipitation 0.1 270 < th dose dependent rect. 5 9
855 209.32 wind 1.0 270 > th dose independent rect. 1 17
859 209.35 temperature 25.0 90 < th dose independent rect. 1 10
871 209.42 wind 9.0 270 < th dose independent rect. 14 15
876 209.43 temperature 15.0 270 > th dose independent rect. 18 20
877 209.44 temperature 10.0 270 > th dose independent rect. 18 6
879 209.44 radiation 20.0 270 < th dose independent rect. 18 6
882 209.44 temperature 10.0 270 > th dose independent rect. 24 18
884 209.47 atmosphere 1015.0 270 < th dose independent rect. 24 18
894 209.56 wind 9.0 270 < th dose independent rect. 18 6
908 209.68 radiation 20.0 10 < th dose dependent rect. 10 23
911 209.72 wind 1.0 270 > th dose independent rect. 13 5
957 210.08 atmosphere 995.0 270 > th dose independent rect. 18 6
993 210.30 atmosphere 995.0 270 > th dose independent rect. 24 18