Os03g0161000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0161000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.34 | 0.279 | 11.8 | 0.142 | 0.49 | 0.455 | -0.279 | -0.0583 | 0.151 | 24 | 21.4 | 770 | -- | -- |
| 35.35 | 0.277 | 11.8 | 0.154 | 0.488 | 0.458 | -0.294 | -- | 0.156 | 0.000614 | 21.35 | 770 | -- | -- |
| 35.63 | 0.278 | 11.8 | 0.131 | 0.484 | 0.454 | -- | -0.152 | 0.145 | 23.8 | 21.3 | 787 | -- | -- |
| 35.71 | 0.278 | 11.8 | 0.165 | 0.493 | 0.458 | -- | -- | 0.156 | 23.9 | 21.37 | 770 | -- | -- |
| 49.98 | 0.329 | 11.8 | 0.131 | -- | 0.563 | -- | -0.0522 | 0.113 | -- | 21.8 | 824 | -- | -- |
| 42.57 | 0.306 | 11.8 | 0.321 | 0.565 | -- | -0.306 | -- | 0.28 | 23.7 | -- | -- | -- | -- |
| 42.96 | 0.307 | 11.8 | 0.334 | 0.567 | -- | -- | -- | 0.282 | 23.6 | -- | -- | -- | -- |
| 49.95 | 0.329 | 11.8 | 0.147 | -- | 0.565 | -- | -- | 0.113 | -- | 21.87 | 817 | -- | -- |
| 36.39 | 0.281 | 11.8 | -- | 0.485 | 0.502 | -- | -- | 0.126 | 23.9 | 21.4 | 797 | -- | -- |
| 63.14 | 0.371 | 11.8 | 0.35 | -- | -- | -- | -- | 0.288 | -- | -- | -- | -- | -- |
| 45.9 | 0.317 | 11.8 | -- | 0.571 | -- | -- | -- | 0.244 | 23.6 | -- | -- | -- | -- |
| 50.39 | 0.331 | 11.8 | -- | -- | 0.639 | -- | -- | 0.0998 | -- | 21.34 | 836 | -- | -- |
| 66.36 | 0.38 | 11.8 | -- | -- | -- | -- | -- | 0.249 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 33.35 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 11 | 33.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 7 |
| 25 | 34.14 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 33 | 34.21 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 4 |
| 35 | 34.23 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 36 | 34.24 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 6 |
| 77 | 34.51 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 81 | 34.52 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 4 |
| 83 | 34.52 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 3 |
| 103 | 34.63 | temperature | 25 | 720 | < th | dose dependent | sin | 6 | NA |
| 145 | 34.78 | temperature | 20 | 720 | > th | dose independent | sin | 10 | NA |
| 237 | 35.02 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 422 | 35.49 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 6 |
| 444 | 35.54 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 9 |
| 488 | 35.64 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 17 |
| 491 | 35.65 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 513 | 35.68 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 15 |
| 531 | 35.70 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 19 |
| 834 | 36.16 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 957 | 36.32 | wind | 1 | 14400 | < th | dose dependent | rect. | 24 | 4 |