Os03g0160100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to EDR1 (Fragment).
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Os03g0160100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to EDR1 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.01 | 0.205 | 11.9 | -0.167 | 0.107 | 0.451 | 0.727 | 0.833 | 0.105 | 19.3 | 21.4 | 1528 | -- | -- |
| 20.68 | 0.212 | 11.9 | -0.342 | 0.11 | 0.409 | 0.648 | -- | 0.069 | 18.8 | 21.4 | 1667 | -- | -- |
| 20.24 | 0.21 | 11.9 | -0.191 | 0.119 | 0.45 | -- | 0.808 | 0.105 | 17.6 | 21.4 | 1616 | -- | -- |
| 21.68 | 0.217 | 11.9 | -0.397 | 0.132 | 0.39 | -- | -- | 0.0661 | 17.4 | 21.4 | 1495 | -- | -- |
| 20.92 | 0.213 | 11.9 | -0.194 | -- | 0.443 | -- | 0.777 | 0.112 | -- | 21.4 | 1797 | -- | -- |
| 24.98 | 0.234 | 11.9 | -0.221 | 0.105 | -- | 0.735 | -- | 0.169 | 19.3 | -- | -- | -- | -- |
| 26.27 | 0.24 | 11.9 | -0.234 | 0.12 | -- | -- | -- | 0.172 | 17.6 | -- | -- | -- | -- |
| 22.36 | 0.22 | 11.9 | -0.418 | -- | 0.4 | -- | -- | 0.0513 | -- | 21.49 | 1857 | -- | -- |
| 24.77 | 0.232 | 11.9 | -- | 0.14 | 0.262 | -- | -- | 0.119 | 17 | 22.4 | 1382 | -- | -- |
| 27.02 | 0.243 | 11.9 | -0.238 | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
| 27.71 | 0.246 | 11.9 | -- | 0.124 | -- | -- | -- | 0.198 | 17.5 | -- | -- | -- | -- |
| 25.77 | 0.236 | 11.9 | -- | -- | 0.254 | -- | -- | 0.117 | -- | 22.31 | 1406 | -- | -- |
| 28.52 | 0.249 | 11.9 | -- | -- | -- | -- | -- | 0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.87 | temperature | 25 | 720 | < th | dose dependent | sin | 17 | NA |
| 3 | 18.92 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 16 |
| 4 | 18.93 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 15 |
| 35 | 19.10 | temperature | 25 | 270 | < th | dose dependent | sin | 13 | NA |
| 38 | 19.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 10 |
| 55 | 19.20 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 76 | 19.26 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 82 | 19.27 | temperature | 25 | 270 | < th | dose dependent | rect. | 12 | 21 |
| 87 | 19.28 | temperature | 25 | 270 | < th | dose dependent | rect. | 6 | 22 |
| 100 | 19.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 115 | 19.33 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 116 | 19.33 | temperature | 25 | 10 | < th | dose dependent | sin | 11 | NA |
| 117 | 19.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 164 | 19.39 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 22 |
| 166 | 19.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 12 |
| 182 | 19.42 | temperature | 25 | 10 | < th | dose dependent | rect. | 14 | 16 |
| 218 | 19.46 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 227 | 19.46 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 240 | 19.47 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 16 |
| 250 | 19.48 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 298 | 19.51 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 3 |
| 380 | 19.55 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 414 | 19.57 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 416 | 19.58 | temperature | 20 | 4320 | > th | dose independent | rect. | 14 | 10 |
| 419 | 19.58 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 441 | 19.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 478 | 19.60 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 479 | 19.60 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 494 | 19.61 | temperature | 25 | 90 | < th | dose dependent | rect. | 18 | 23 |
| 516 | 19.62 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 517 | 19.62 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 521 | 19.63 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 522 | 19.63 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 543 | 19.63 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 550 | 19.64 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 738 | 19.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 766 | 19.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 14 | 10 |
| 860 | 19.74 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 892 | 19.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 939 | 19.76 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 962 | 19.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 987 | 19.78 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |