Os03g0160000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0160000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 111.2 | 0.495 | 8.6 | -0.386 | 0.412 | 1.25 | 0.292 | 0.173 | 0.828 | 18.1 | 22.87 | 45 | -- | -- |
| 111.32 | 0.491 | 8.6 | -0.389 | 0.411 | 1.22 | 0.354 | -- | 0.826 | 18.4 | 22.97 | 46 | -- | -- |
| 111.39 | 0.492 | 8.59 | -0.386 | 0.42 | 1.28 | -- | 0.175 | 0.831 | 17.7 | 22.87 | 46 | -- | -- |
| 111.54 | 0.492 | 8.59 | -0.39 | 0.42 | 1.28 | -- | -- | 0.831 | 17.7 | 22.83 | 46 | -- | -- |
| 119.91 | 0.51 | 8.59 | -0.403 | -- | 1.22 | -- | 0.168 | 0.822 | -- | 22.27 | 42 | -- | -- |
| 138.18 | 0.551 | 8.63 | -0.422 | 1.25 | -- | 0.505 | -- | 0.749 | 23 | -- | -- | -- | -- |
| 139.26 | 0.553 | 8.63 | -0.442 | 1.25 | -- | -- | -- | 0.747 | 23 | -- | -- | -- | -- |
| 120.01 | 0.51 | 8.59 | -0.41 | -- | 1.22 | -- | -- | 0.823 | -- | 22.11 | 41 | -- | -- |
| 115.54 | 0.501 | 8.58 | -- | 0.431 | 1.31 | -- | -- | 0.876 | 17.4 | 22.92 | 46 | -- | -- |
| 236.67 | 0.719 | 8.6 | -0.414 | -- | -- | -- | -- | 0.757 | -- | -- | -- | -- | -- |
| 144.42 | 0.562 | 8.62 | -- | 1.25 | -- | -- | -- | 0.796 | 23 | -- | -- | -- | -- |
| 124.43 | 0.52 | 8.58 | -- | -- | 1.23 | -- | -- | 0.868 | -- | 22.58 | 41 | -- | -- |
| 241.19 | 0.725 | 8.59 | -- | -- | -- | -- | -- | 0.802 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.44 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 3 | 112.60 | radiation | 20 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 4 | 112.63 | radiation | 20 | 30 | < th | dose dependent | no | NA | NA |
| 5 | 112.65 | radiation | 20 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 6 | 112.71 | radiation | 20 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 7 | 113.59 | radiation | 20 | 90 | < th | dose dependent | sin | 2 | NA |
| 9 | 113.93 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 15 | 114.36 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 10 |
| 29 | 114.51 | radiation | 20 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 43 | 115.22 | radiation | 10 | 90 | > th | dose independent | sin | 2 | NA |
| 46 | 115.38 | radiation | 20 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 64 | 115.60 | humidity | 70 | 10 | > th | dose dependent | sin | 1 | NA |
| 76 | 116.09 | radiation | 20 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 80 | 116.24 | radiation | 10 | 90 | > th | dose independent | no | NA | NA |
| 159 | 116.35 | radiation | 10 | 90 | > th | dose independent | rect. | 15 | 23 |
| 173 | 116.53 | radiation | 10 | 90 | < th | dose independent | sin | 2 | NA |
| 182 | 116.66 | radiation | 10 | 90 | < th | dose independent | rect. | 17 | 23 |
| 193 | 117.06 | humidity | 70 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 203 | 117.21 | humidity | 80 | 10 | < th | dose independent | rect. | 6 | 12 |
| 207 | 117.24 | radiation | 10 | 90 | < th | dose independent | rect. | 11 | 23 |
| 211 | 117.30 | radiation | 10 | 90 | < th | dose independent | rect. | 15 | 23 |
| 216 | 117.39 | radiation | 10 | 90 | < th | dose independent | no | NA | NA |
| 218 | 117.43 | humidity | 80 | 10 | > th | dose independent | sin | 1 | NA |
| 222 | 117.46 | humidity | 90 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 228 | 117.57 | radiation | 10 | 90 | < th | dose independent | rect. | 21 | 23 |
| 320 | 117.79 | radiation | 10 | 90 | < th | dose independent | rect. | 9 | 23 |
| 321 | 117.79 | radiation | 20 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 346 | 117.93 | humidity | 90 | 10 | < th | dose dependent | rect. | 23 | 17 |
| 363 | 117.99 | radiation | 10 | 90 | < th | dose independent | rect. | 7 | 23 |
| 394 | 118.12 | humidity | 90 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 411 | 118.27 | humidity | 80 | 10 | > th | dose independent | rect. | 1 | 19 |
| 421 | 118.33 | humidity | 90 | 30 | < th | dose dependent | rect. | 19 | 21 |
| 439 | 118.54 | humidity | 80 | 10 | < th | dose independent | rect. | 2 | 16 |
| 463 | 118.66 | humidity | 80 | 10 | < th | dose independent | rect. | 23 | 19 |
| 466 | 118.67 | radiation | 1 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 485 | 118.82 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 18 |
| 487 | 118.82 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 18 |
| 529 | 119.09 | humidity | 90 | 10 | < th | dose dependent | sin | 2 | NA |
| 564 | 119.31 | radiation | 10 | 90 | < th | dose independent | rect. | 24 | 23 |
| 566 | 119.32 | humidity | 80 | 10 | < th | dose independent | sin | 1 | NA |
| 609 | 119.53 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 643 | 119.65 | radiation | 20 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 688 | 119.90 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 717 | 120.02 | radiation | 1 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 733 | 120.03 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 760 | 120.11 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 12 |
| 768 | 120.16 | radiation | 1 | 30 | > th | dose dependent | no | NA | NA |
| 862 | 120.23 | radiation | 10 | 90 | < th | dose independent | rect. | 1 | 15 |
| 957 | 120.27 | radiation | 10 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 974 | 120.34 | humidity | 80 | 30 | < th | dose independent | rect. | 19 | 23 |
| 977 | 120.35 | radiation | 10 | 90 | > th | dose independent | rect. | 13 | 23 |
| 991 | 120.39 | radiation | 10 | 90 | < th | dose independent | rect. | 7 | 12 |
| 997 | 120.40 | radiation | 10 | 90 | > th | dose independent | rect. | 9 | 23 |