Os03g0159800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Complex 1 LYR protein family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0159800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Complex 1 LYR protein family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.13 | 0.305 | 8.07 | -0.374 | 0.211 | -0.7 | 0.442 | 1.2 | 0.13 | 0.481 | 19.9 | 2760 | -- | -- |
| 44.02 | 0.309 | 8.03 | -0.174 | 0.243 | -0.951 | 0.551 | -- | 0.2 | 0.243 | 19 | 2892 | -- | -- |
| 42.87 | 0.305 | 8.07 | -0.41 | 0.225 | -0.703 | -- | 1.22 | 0.123 | 0.767 | 19.9 | 2860 | -- | -- |
| 44.25 | 0.31 | 8.03 | -0.23 | 0.236 | -1.06 | -- | -- | 0.177 | 0.95 | 18.9 | 2987 | -- | -- |
| 45.71 | 0.315 | 8.07 | -0.387 | -- | -0.732 | -- | 1.13 | 0.128 | -- | 19.82 | 2747 | -- | -- |
| 60.37 | 0.364 | 7.98 | 0.297 | 0.243 | -- | 0.358 | -- | 0.394 | 0.747 | -- | -- | -- | -- |
| 60.85 | 0.365 | 7.98 | 0.283 | 0.246 | -- | -- | -- | 0.391 | 1.29 | -- | -- | -- | -- |
| 47.27 | 0.32 | 8.02 | -0.224 | -- | -1.05 | -- | -- | 0.181 | -- | 19.03 | 2795 | -- | -- |
| 45.27 | 0.313 | 8.02 | -- | 0.222 | -0.903 | -- | -- | 0.222 | 0.985 | 19 | 2895 | -- | -- |
| 64.58 | 0.376 | 7.98 | 0.292 | -- | -- | -- | -- | 0.396 | -- | -- | -- | -- | -- |
| 62.96 | 0.371 | 7.99 | -- | 0.251 | -- | -- | -- | 0.36 | 1.33 | -- | -- | -- | -- |
| 48.19 | 0.323 | 8.01 | -- | -- | -0.914 | -- | -- | 0.226 | -- | 19.02 | 2763 | -- | -- |
| 66.84 | 0.382 | 7.98 | -- | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.02 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 2 | 42.15 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 7 | 42.29 | temperature | 20 | 4320 | > th | dose independent | rect. | 15 | 9 |
| 11 | 42.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 7 |
| 34 | 42.59 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 51 | 42.79 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 62 | 42.86 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 119 | 43.33 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 219 | 43.87 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 297 | 44.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 305 | 44.12 | temperature | 15 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 323 | 44.16 | humidity | 90 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 342 | 44.21 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 346 | 44.21 | temperature | 15 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 350 | 44.23 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 355 | 44.23 | radiation | 1 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 356 | 44.23 | temperature | 25 | 4320 | < th | dose dependent | rect. | 16 | 6 |
| 394 | 44.30 | radiation | 1 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 402 | 44.30 | radiation | 1 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 406 | 44.31 | radiation | 1 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 420 | 44.32 | temperature | 30 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 432 | 44.34 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 467 | 44.38 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 470 | 44.39 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 476 | 44.39 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 23 |
| 478 | 44.39 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 520 | 44.44 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 522 | 44.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 523 | 44.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 594 | 44.51 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 23 |
| 599 | 44.51 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 10 |
| 634 | 44.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 23 |
| 682 | 44.60 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 683 | 44.60 | wind | 3 | 14400 | > th | dose independent | rect. | 7 | 8 |
| 727 | 44.64 | humidity | 90 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 739 | 44.65 | wind | 3 | 14400 | < th | dose independent | rect. | 8 | 7 |
| 784 | 44.70 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 832 | 44.75 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 879 | 44.79 | humidity | 70 | 43200 | > th | dose independent | rect. | 22 | 12 |
| 985 | 44.89 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 6 |