Os03g0159700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os03g0159700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 61.59 | 0.369 | 7.64 | -0.00835 | 0.589 | -0.403 | -0.568 | -0.35 | 0.157 | 0.789 | 20.5 | 14 | -- | -- |
| 62.14 | 0.367 | 7.64 | -0.0707 | 0.587 | -0.391 | -0.714 | -- | 0.139 | 0.789 | 20.52 | 13 | -- | -- |
| 62.77 | 0.372 | 7.63 | 0.05 | 0.596 | -0.412 | -- | -0.534 | 0.167 | 0.799 | 20.5 | 13 | -- | -- |
| 64.32 | 0.376 | 7.64 | -0.0476 | 0.586 | -0.385 | -- | -- | 0.146 | 0.781 | 20.5 | 13 | -- | -- |
| 83.1 | 0.425 | 7.61 | 0.0971 | -- | -0.223 | -- | -0.441 | 0.209 | -- | 20.58 | 10 | -- | -- |
| 68.38 | 0.388 | 7.63 | 0.0215 | 0.492 | -- | -0.752 | -- | 0.217 | 0.777 | -- | -- | -- | -- |
| 70.77 | 0.394 | 7.62 | 0.0495 | 0.493 | -- | -- | -- | 0.221 | 0.745 | -- | -- | -- | -- |
| 84.07 | 0.427 | 7.62 | 0.032 | -- | -0.194 | -- | -- | 0.196 | -- | 20.5 | 2 | -- | -- |
| 64.38 | 0.376 | 7.64 | -- | 0.584 | -0.378 | -- | -- | 0.153 | 0.777 | 20.5 | 10 | -- | -- |
| 86 | 0.433 | 7.62 | 0.0673 | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
| 70.84 | 0.394 | 7.63 | -- | 0.494 | -- | -- | -- | 0.215 | 0.749 | -- | -- | -- | -- |
| 83.08 | 0.426 | 7.62 | -- | -- | -0.785 | -- | -- | 0.211 | -- | 16.24 | 21 | -- | -- |
| 86.12 | 0.433 | 7.62 | -- | -- | -- | -- | -- | 0.222 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.61 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 4 | 61.08 | radiation | 20.0 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 18 | 61.21 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 8 | 5 |
| 20 | 61.31 | temperature | 20.0 | 90 | > th | dose independent | rect. | 12 | 16 |
| 22 | 61.55 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 24 | 61.57 | atmosphere | 1000.0 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 32 | 61.69 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 2 |
| 39 | 61.72 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 6 | 8 |
| 45 | 61.74 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 11 | 19 |
| 51 | 61.75 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 55 | 61.77 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 69 | 61.81 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 78 | 61.83 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 4 | 9 |
| 82 | 61.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 83 | 61.85 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 17 |
| 105 | 61.90 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 21 |
| 147 | 62.02 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 164 | 62.06 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 179 | 62.10 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 19 | 5 |
| 188 | 62.11 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 16 | 21 |
| 191 | 62.12 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 19 | 5 |
| 214 | 62.16 | temperature | 20.0 | 90 | < th | dose independent | rect. | 10 | 19 |
| 240 | 62.19 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 256 | 62.20 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 280 | 62.24 | temperature | 20.0 | 90 | > th | dose independent | rect. | 12 | 19 |
| 281 | 62.24 | temperature | 20.0 | 10 | > th | dose independent | rect. | 17 | 23 |
| 299 | 62.27 | temperature | 20.0 | 90 | < th | dose independent | rect. | 18 | 11 |
| 322 | 62.31 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 19 | 17 |
| 330 | 62.33 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 335 | 62.33 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 339 | 62.34 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 361 | 62.34 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 13 | 21 |
| 365 | 62.35 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 18 |
| 421 | 62.39 | temperature | 25.0 | 30 | < th | dose dependent | sin | 16 | NA |
| 464 | 62.42 | temperature | 20.0 | 30 | < th | dose dependent | sin | 8 | NA |
| 479 | 62.43 | temperature | 20.0 | 10 | < th | dose independent | rect. | 11 | 19 |
| 496 | 62.45 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 11 |
| 537 | 62.48 | temperature | 20.0 | 270 | < th | dose independent | rect. | 8 | 20 |
| 538 | 62.48 | temperature | 20.0 | 90 | > th | dose independent | rect. | 17 | 23 |
| 565 | 62.49 | temperature | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 574 | 62.49 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 591 | 62.50 | atmosphere | 1000.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 598 | 62.50 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 601 | 62.50 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 602 | 62.50 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 603 | 62.50 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 615 | 62.51 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 634 | 62.53 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 642 | 62.53 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 753 | 62.60 | temperature | 20.0 | 270 | < th | dose dependent | sin | 19 | NA |
| 765 | 62.61 | temperature | 20.0 | 90 | > th | dose independent | rect. | 11 | 23 |
| 836 | 62.65 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 22 |
| 906 | 62.68 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 922 | 62.69 | temperature | 20.0 | 10 | < th | dose independent | sin | 11 | NA |
| 924 | 62.69 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 984 | 62.70 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 14 | 3 |