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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0159100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0293) R2 : 0.385
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.55 (0.0967) R2dE : 0.368 R2E : 0.372
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.158 (0.0618) R2dN8 : 0.0127 R2N8 : 0.017
σ : 0.551
deviance : 139.82
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 15.63
memory length : 233
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 8.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.53 0.485 10.6 -0.558 0.194 -1.49 -2.41 -1.67 -0.265 2.98 13.43 208 16.2 8.36
107.41 0.483 10.6 -0.467 0.253 -1.54 -2.55 -- -0.235 1.77 11.88 200 16.3 8.4
121.86 0.514 10.6 -0.576 0.38 -1.53 -- -3.09 -0.269 1.28 11.3 239 16.2 8.62
134.2 0.54 10.6 -0.398 0.341 -1.75 -- -- -0.233 23.8 12.09 219 16.2 8.19
125.55 0.522 10.6 -0.578 -- -1.35 -- -3.02 -0.267 -- 12.58 177 16.4 8.47
149.71 0.574 10.6 -0.584 0.931 -- 2.06 -- -0.294 9.62 -- -- -- --
162.14 0.596 10.6 -0.517 0.977 -- -- -- -0.297 8.62 -- -- -- --
136.08 0.543 10.6 -0.397 -- -1.54 -- -- -0.245 -- 14.57 211 16.1 7.87
138.32 0.548 10.6 -- 0.345 -1.83 -- -- -0.171 23.4 12.96 227 16.1 8.13
215.94 0.687 10.6 -0.514 -- -- -- -- -0.289 -- -- -- -- --
169.19 0.608 10.6 -- 0.976 -- -- -- -0.24 8.66 -- -- -- --
139.82 0.551 10.6 -- -- -1.55 -- -- -0.158 -- 15.63 233 15.9 8.2
222.91 0.697 10.6 -- -- -- -- -- -0.232 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.00 temperature 15.0 270 > th dose dependent rect. 16 8
14 111.44 temperature 10.0 270 > th dose dependent rect. 17 15
19 112.20 wind 7.0 270 < th dose independent rect. 15 8
23 112.51 wind 1.0 270 > th dose independent rect. 15 8
24 112.84 temperature 25.0 270 < th dose independent rect. 21 7
31 113.91 temperature 10.0 10 > th dose dependent rect. 17 8
32 113.93 wind 1.0 90 > th dose independent rect. 17 8
41 114.44 atmosphere 995.0 270 > th dose independent rect. 23 16
45 114.62 precipitation 0.1 270 < th dose independent rect. 23 16
46 114.62 precipitation 0.1 270 < th dose dependent rect. 23 16
47 114.68 temperature 25.0 90 < th dose independent rect. 20 10
49 114.90 temperature 10.0 270 > th dose independent rect. 15 8
50 114.90 temperature 10.0 270 > th dose independent rect. 23 16
51 114.96 precipitation 0.1 270 < th dose independent rect. 15 8
52 114.96 precipitation 0.1 270 < th dose dependent rect. 15 8
54 115.03 wind 7.0 90 < th dose independent rect. 17 8
56 115.06 radiation 40.0 270 < th dose independent rect. 15 8
57 115.09 temperature 30.0 270 < th dose dependent rect. 21 7
58 115.11 temperature 25.0 270 < th dose independent rect. 23 4
61 115.20 wind 9.0 270 < th dose independent rect. 23 16
64 115.29 atmosphere 1015.0 270 < th dose independent rect. 23 16
68 115.40 wind 9.0 270 < th dose independent rect. 5 15
79 115.76 atmosphere 995.0 90 > th dose independent rect. 1 16
82 115.83 radiation 1.0 270 < th dose dependent sin 11 NA
86 115.94 humidity 50.0 270 > th dose dependent rect. 21 7
90 116.13 atmosphere 1015.0 270 < th dose independent rect. 15 8
93 116.16 temperature 10.0 270 > th dose independent rect. 21 8
95 116.16 humidity 50.0 270 > th dose independent rect. 21 8
98 116.16 atmosphere 995.0 270 > th dose independent rect. 21 8
99 116.16 radiation 20.0 270 < th dose independent rect. 21 8
102 116.16 temperature 10.0 270 > th dose independent rect. 5 16
103 116.16 radiation 20.0 270 < th dose dependent rect. 21 8
106 116.17 radiation 1.0 270 < th dose independent rect. 21 8
121 116.22 atmosphere 1015.0 270 < th dose independent rect. 5 15
133 116.33 wind 9.0 270 < th dose dependent rect. 15 8
134 116.36 precipitation 0.1 270 < th dose independent rect. 21 8
135 116.36 precipitation 0.1 270 < th dose dependent rect. 21 8
138 116.38 wind 9.0 270 < th dose independent rect. 21 8
177 116.67 precipitation 0.1 270 < th dose independent rect. 5 16
178 116.67 precipitation 0.1 270 < th dose dependent rect. 5 16
179 116.69 atmosphere 1015.0 270 < th dose dependent rect. 22 6
181 116.74 precipitation 0.1 90 < th dose independent rect. 1 16
182 116.74 precipitation 0.1 90 < th dose dependent rect. 1 16
211 116.94 temperature 10.0 90 > th dose independent rect. 17 8
212 116.94 radiation 20.0 90 < th dose independent rect. 17 8
215 116.94 temperature 10.0 90 > th dose independent rect. 1 16
216 116.94 atmosphere 1015.0 90 < th dose independent rect. 1 16
226 117.05 wind 7.0 10 < th dose independent rect. 17 8
229 117.09 radiation 1.0 270 < th dose independent sin 11 NA
240 117.18 wind 7.0 270 < th dose independent rect. 16 17
255 117.43 wind 9.0 90 < th dose independent rect. 1 16
294 117.90 humidity 50.0 270 > th dose independent rect. 23 16
297 117.92 wind 1.0 270 > th dose independent rect. 5 16
303 118.01 radiation 40.0 90 < th dose dependent rect. 17 8
316 118.19 atmosphere 995.0 270 > th dose independent rect. 9 7
317 118.19 atmosphere 995.0 270 > th dose independent rect. 15 8
319 118.21 temperature 25.0 90 < th dose independent sin 10 NA
326 118.25 humidity 50.0 90 > th dose independent rect. 1 16
328 118.25 radiation 30.0 270 < th dose independent rect. 16 17
341 118.36 atmosphere 995.0 90 > th dose independent rect. 17 8
386 118.52 temperature 10.0 10 > th dose dependent sin 10 NA
391 118.60 radiation 1.0 270 < th dose dependent rect. 21 13
406 118.71 atmosphere 1015.0 90 < th dose independent rect. 17 8
409 118.74 atmosphere 995.0 10 > th dose independent rect. 1 16
417 118.81 temperature 10.0 90 > th dose dependent sin 11 NA
453 119.03 atmosphere 1015.0 270 < th dose independent rect. 21 7
468 119.14 precipitation 0.1 270 < th dose independent rect. 9 7
470 119.14 precipitation 0.1 270 < th dose dependent rect. 9 7
483 119.20 temperature 10.0 270 > th dose dependent rect. 4 19
504 119.36 humidity 50.0 90 > th dose independent rect. 17 8
515 119.44 temperature 15.0 270 > th dose independent rect. 9 7
516 119.44 wind 9.0 10 < th dose independent rect. 1 16
525 119.49 atmosphere 1015.0 270 < th dose independent rect. 9 7
526 119.49 temperature 10.0 270 > th dose independent rect. 16 17
534 119.54 wind 9.0 270 < th dose independent rect. 9 7
535 119.54 precipitation 0.1 10 < th dose independent rect. 17 8
537 119.54 precipitation 0.1 10 < th dose dependent rect. 17 8
548 119.60 temperature 10.0 10 > th dose independent rect. 17 8
549 119.60 radiation 20.0 10 < th dose independent rect. 17 8
552 119.60 temperature 10.0 10 > th dose independent rect. 1 16
554 119.60 atmosphere 1015.0 10 < th dose independent rect. 1 16
558 119.61 precipitation 0.1 10 < th dose independent rect. 1 16
561 119.61 precipitation 0.1 10 < th dose dependent rect. 1 16
591 119.82 radiation 40.0 10 < th dose dependent rect. 17 8
611 119.86 radiation 1.0 90 < th dose independent sin 7 NA
614 119.87 radiation 10.0 30 < th dose dependent sin 7 NA
622 119.92 radiation 1.0 270 > th dose independent rect. 9 7
639 120.00 temperature 10.0 270 > th dose dependent rect. 5 17
754 120.44 radiation 1.0 270 < th dose independent rect. 21 13
756 120.45 radiation 1.0 270 < th dose independent rect. 21 15
798 120.57 radiation 30.0 90 < th dose dependent rect. 15 10
802 120.59 atmosphere 995.0 270 > th dose independent rect. 4 17
815 120.63 precipitation 0.1 270 < th dose independent rect. 16 17
817 120.63 precipitation 0.1 270 < th dose dependent rect. 16 17
826 120.66 atmosphere 1015.0 10 < th dose dependent rect. 1 5
827 120.67 temperature 30.0 270 < th dose independent rect. 23 16
930 120.93 wind 1.0 30 > th dose independent rect. 6 19
967 121.01 atmosphere 1015.0 10 < th dose independent rect. 17 8
983 121.05 radiation 40.0 270 < th dose dependent rect. 17 16