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Os03g0158200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Helicase, C-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.7 (0.0169) R2 : 0.294
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.558 (0.0404) R2dC : 0.296 R2C : 0.294
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.00386 (0.0355) R2dN8 : 2.37e-05 R2N8 : -0.00127
σ : 0.318
deviance : 46.19
__
_____
C
peak time of C : 10.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.88 0.273 10.7 0.55 0.149 -0.434 -0.985 -0.488 0.0524 6.65 11.06 6 -- --
33.96 0.271 10.7 0.544 0.117 -0.487 -0.995 -- 0.0504 4.62 10.47 2 -- --
35.76 0.279 10.7 0.545 0.204 -0.343 -- -0.269 0.0412 9.22 10.22 2 -- --
36.21 0.28 10.7 0.548 0.204 -0.349 -- -- 0.0582 9.22 11.16 2 -- --
36.79 0.282 10.7 0.551 -- -0.463 -- -0.263 0.0583 -- 10 3 -- --
37.96 0.289 10.7 0.538 0.562 -- 0.284 -- 0.0645 11 -- -- -- --
38.27 0.29 10.7 0.548 0.562 -- -- -- 0.0649 10.9 -- -- -- --
37.2 0.284 10.7 0.56 -- -0.464 -- -- 0.0602 -- 10 3 -- --
44.05 0.309 10.7 -- 0.201 -0.357 -- -- 0.000552 8.92 12.4 2 -- --
57.88 0.355 10.7 0.536 -- -- -- -- 0.0611 -- -- -- -- --
46.19 0.318 10.7 -- 0.558 -- -- -- 0.00386 10.8 -- -- -- --
45.23 0.313 10.8 -- -- -0.465 -- -- -0.00116 -- 11.54 2 -- --
65.47 0.378 10.8 -- -- -- -- -- 0.00164 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.27 temperature 20.0 10 > th dose independent rect. 20 16
4 32.61 radiation 30.0 90 < th dose dependent rect. 23 10
11 32.85 wind 5.0 270 < th dose independent rect. 21 8
17 32.94 wind 5.0 90 < th dose independent rect. 23 8
20 32.94 radiation 10.0 90 < th dose dependent rect. 23 16
21 32.96 radiation 30.0 10 < th dose dependent rect. 23 10
23 32.98 radiation 10.0 90 < th dose independent rect. 23 11
25 32.99 radiation 1.0 270 < th dose independent rect. 21 20
27 32.99 radiation 10.0 10 < th dose dependent rect. 23 23
32 33.04 radiation 40.0 10 < th dose dependent sin 8 NA
41 33.08 radiation 10.0 720 < th dose independent rect. 14 11
48 33.10 radiation 10.0 10 < th dose dependent rect. 21 23
50 33.11 radiation 40.0 90 < th dose dependent sin 9 NA
51 33.11 radiation 10.0 90 < th dose dependent rect. 23 18
61 33.15 radiation 1.0 270 < th dose independent rect. 21 14
68 33.17 temperature 20.0 10 > th dose independent rect. 22 14
78 33.20 temperature 10.0 90 > th dose dependent rect. 20 15
84 33.23 radiation 1.0 270 < th dose dependent rect. 21 21
92 33.27 radiation 20.0 10 < th dose independent sin 9 NA
98 33.29 temperature 20.0 10 > th dose independent rect. 20 8
99 33.30 radiation 20.0 10 < th dose independent rect. 23 10
107 33.31 temperature 20.0 270 > th dose independent rect. 6 16
109 33.31 humidity 50.0 720 > th dose dependent rect. 18 8
111 33.32 radiation 1.0 270 < th dose independent sin 9 NA
120 33.34 radiation 10.0 720 < th dose independent rect. 16 9
123 33.34 temperature 10.0 90 > th dose dependent sin 11 NA
124 33.34 temperature 10.0 10 > th dose dependent rect. 20 16
135 33.37 atmosphere 995.0 270 > th dose independent rect. 5 16
140 33.38 radiation 10.0 270 < th dose dependent rect. 21 11
149 33.41 atmosphere 1000.0 270 > th dose independent rect. 13 10
151 33.41 temperature 10.0 10 > th dose dependent sin 10 NA
156 33.42 temperature 20.0 90 > th dose independent sin 8 NA
162 33.42 radiation 1.0 270 < th dose dependent rect. 21 14
164 33.42 radiation 10.0 90 < th dose dependent rect. 23 20
177 33.44 humidity 50.0 720 > th dose dependent rect. 15 16
178 33.45 atmosphere 1000.0 90 > th dose independent sin 16 NA
181 33.45 temperature 15.0 10 > th dose dependent rect. 20 8
185 33.46 humidity 60.0 14400 > th dose independent rect. 24 8
195 33.47 humidity 50.0 720 > th dose dependent sin 13 NA
203 33.48 atmosphere 1000.0 270 > th dose independent rect. 18 16
208 33.49 atmosphere 1000.0 10 > th dose independent sin 15 NA
214 33.49 temperature 10.0 270 > th dose dependent rect. 17 11
224 33.51 wind 7.0 720 < th dose independent rect. 16 8
227 33.51 temperature 30.0 720 < th dose independent rect. 3 21
252 33.54 wind 1.0 270 > th dose independent sin 23 NA
255 33.54 humidity 60.0 720 > th dose independent rect. 14 17
269 33.55 precipitation 0.1 270 < th dose independent rect. 21 8
271 33.55 precipitation 0.1 270 < th dose dependent rect. 21 8
279 33.56 radiation 20.0 90 < th dose independent sin 10 NA
294 33.57 temperature 30.0 720 < th dose independent rect. 7 17
334 33.62 temperature 15.0 270 > th dose independent rect. 22 7
338 33.62 temperature 30.0 720 < th dose independent rect. 5 19
342 33.62 wind 9.0 270 < th dose dependent rect. 21 8
357 33.64 radiation 1.0 270 > th dose independent sin 6 NA
366 33.64 wind 7.0 720 < th dose independent rect. 17 16
372 33.65 humidity 60.0 720 > th dose independent rect. 14 13
397 33.67 temperature 30.0 270 < th dose independent rect. 22 7
398 33.67 humidity 50.0 270 > th dose independent rect. 22 7
401 33.67 atmosphere 995.0 270 > th dose independent rect. 22 7
455 33.69 radiation 10.0 720 < th dose independent sin 16 NA
457 33.69 atmosphere 1000.0 90 > th dose independent rect. 15 10
459 33.69 atmosphere 1015.0 270 < th dose independent rect. 5 16
466 33.69 humidity 50.0 720 > th dose dependent rect. 15 12
479 33.71 temperature 30.0 720 < th dose independent rect. 12 7
480 33.71 humidity 60.0 720 > th dose independent rect. 15 10
486 33.72 atmosphere 1000.0 90 > th dose independent sin 12 NA
494 33.72 radiation 20.0 10 < th dose dependent rect. 23 15
503 33.73 temperature 10.0 270 > th dose dependent rect. 22 7
536 33.75 radiation 10.0 720 < th dose dependent rect. 14 12
539 33.76 atmosphere 1000.0 10 > th dose independent rect. 14 10
541 33.76 atmosphere 1015.0 90 < th dose independent rect. 7 16
544 33.76 wind 1.0 270 > th dose independent rect. 11 18
547 33.76 atmosphere 1015.0 90 < th dose dependent rect. 23 7
562 33.77 atmosphere 1000.0 720 > th dose independent rect. 15 10
567 33.77 humidity 60.0 720 > th dose independent rect. 14 20
568 33.77 atmosphere 1010.0 10 < th dose dependent rect. 24 7
573 33.78 wind 9.0 270 < th dose independent rect. 5 17
576 33.78 temperature 10.0 720 > th dose dependent rect. 16 5
579 33.79 humidity 60.0 720 > th dose independent sin 14 NA
584 33.79 radiation 40.0 720 < th dose independent rect. 14 16
590 33.79 atmosphere 995.0 720 > th dose independent rect. 1 23
602 33.80 wind 9.0 90 < th dose independent rect. 7 16
605 33.80 atmosphere 995.0 720 > th dose independent rect. 13 23
606 33.80 precipitation 0.1 720 < th dose independent rect. 13 23
613 33.80 precipitation 0.1 720 < th dose dependent rect. 13 23
614 33.81 temperature 30.0 720 < th dose independent sin 20 NA
615 33.81 atmosphere 1000.0 10 > th dose independent sin 11 NA
654 33.83 wind 9.0 720 < th dose independent rect. 12 16
659 33.83 atmosphere 995.0 720 > th dose independent rect. 15 16
661 33.83 radiation 10.0 720 < th dose independent rect. 14 16
676 33.84 atmosphere 1000.0 10 > th dose independent rect. 12 12
691 33.85 wind 9.0 1440 < th dose independent rect. 24 8
707 33.85 radiation 10.0 720 < th dose dependent rect. 16 9
708 33.85 temperature 30.0 10 < th dose dependent rect. 14 10
735 33.86 wind 9.0 270 < th dose dependent rect. 5 16
749 33.87 atmosphere 1015.0 10 < th dose dependent sin 8 NA
759 33.88 atmosphere 1000.0 720 > th dose independent rect. 11 5
774 33.88 radiation 10.0 10 < th dose dependent rect. 23 21
806 33.90 humidity 60.0 14400 > th dose independent rect. 2 6
809 33.90 atmosphere 1010.0 90 < th dose independent rect. 20 15
821 33.90 atmosphere 1015.0 10 < th dose dependent rect. 20 16
825 33.91 wind 9.0 720 < th dose independent sin 10 NA
826 33.91 radiation 20.0 1440 < th dose independent rect. 11 2
828 33.91 atmosphere 1015.0 270 < th dose independent rect. 22 7
829 33.91 atmosphere 1000.0 720 > th dose independent rect. 13 14
832 33.91 atmosphere 1000.0 10 > th dose independent rect. 20 16
852 33.92 precipitation 0.1 270 < th dose independent rect. 5 16
872 33.92 precipitation 0.1 270 < th dose dependent rect. 5 16
874 33.92 radiation 20.0 10 < th dose dependent rect. 13 20
876 33.93 temperature 30.0 720 < th dose independent sin 6 NA
881 33.93 atmosphere 995.0 720 > th dose independent rect. 9 8
882 33.93 wind 1.0 270 > th dose independent rect. 9 9
883 33.93 temperature 30.0 720 < th dose independent rect. 23 16
899 33.94 temperature 30.0 10 < th dose dependent sin 16 NA
910 33.95 wind 7.0 720 < th dose independent sin 13 NA
926 33.96 atmosphere 995.0 720 > th dose independent sin 9 NA
942 33.96 wind 1.0 270 > th dose independent rect. 22 7
981 33.97 temperature 20.0 10 > th dose independent rect. 20 11
988 33.97 precipitation 0.1 90 < th dose independent rect. 7 16