Os03g0157900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0157900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 89.23 | 0.444 | 12.5 | 0.122 | 0.577 | -0.792 | 1.93 | 0.329 | -0.244 | 17.3 | 38.36 | 9 | -- | -- |
| 89.48 | 0.441 | 12.5 | 0.0922 | 0.579 | -0.833 | 1.92 | -- | -0.251 | 17.5 | 39.01 | 8 | -- | -- |
| 98.08 | 0.461 | 12.5 | 0.114 | 0.627 | -0.706 | -- | 0.0787 | -0.228 | 16.4 | 43.36 | 7 | -- | -- |
| 98.09 | 0.461 | 12.5 | 0.115 | 0.624 | -0.707 | -- | -- | -0.232 | 16.4 | 42.79 | 7 | -- | -- |
| 105.02 | 0.477 | 12.5 | 0.0933 | -- | -0.927 | -- | -0.131 | -0.255 | -- | 25.52 | 195 | -- | -- |
| 104.03 | 0.478 | 12.5 | 0.114 | 0.962 | -- | 0.97 | -- | -0.233 | 14.8 | -- | -- | -- | -- |
| 106.98 | 0.484 | 12.5 | 0.137 | 0.961 | -- | -- | -- | -0.228 | 14.5 | -- | -- | -- | -- |
| 104.84 | 0.477 | 12.5 | 0.0675 | -- | -0.994 | -- | -- | -0.297 | -- | 29.51 | 197 | -- | -- |
| 98.43 | 0.462 | 12.5 | -- | 0.62 | -0.711 | -- | -- | -0.245 | 16.5 | 42.33 | 7 | -- | -- |
| 161.22 | 0.593 | 12.5 | 0.096 | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
| 107.47 | 0.485 | 12.5 | -- | 0.958 | -- | -- | -- | -0.243 | 14.5 | -- | -- | -- | -- |
| 104.96 | 0.477 | 12.5 | -- | -- | -0.993 | -- | -- | -0.304 | -- | 29.35 | 197 | -- | -- |
| 161.46 | 0.593 | 12.5 | -- | -- | -- | -- | -- | -0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 86.31 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 26 | 87.08 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 29 | 87.12 | radiation | 30 | 43200 | > th | dose dependent | rect. | 15 | 17 |
| 30 | 87.13 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 32 | 87.18 | humidity | 50 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 33 | 87.18 | radiation | 40 | 43200 | < th | dose dependent | rect. | 17 | 13 |
| 34 | 87.19 | temperature | 10 | 270 | > th | dose dependent | rect. | 15 | 16 |
| 38 | 87.25 | humidity | 50 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 41 | 87.30 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 47 | 87.32 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 49 | 87.33 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 54 | 87.34 | radiation | 20 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 56 | 87.34 | wind | 5 | 270 | < th | dose independent | rect. | 15 | 16 |
| 79 | 87.36 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 100 | 87.38 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 125 | 87.45 | wind | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 168 | 87.54 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 179 | 87.59 | humidity | 60 | 43200 | < th | dose dependent | rect. | 19 | 17 |
| 183 | 87.61 | radiation | 20 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 213 | 87.67 | radiation | 40 | 43200 | < th | dose dependent | rect. | 16 | 9 |
| 222 | 87.68 | radiation | 20 | 43200 | < th | dose dependent | rect. | 16 | 9 |
| 230 | 87.69 | radiation | 20 | 43200 | < th | dose dependent | rect. | 16 | 7 |
| 244 | 87.70 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 245 | 87.70 | radiation | 20 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 299 | 87.74 | radiation | 40 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 307 | 87.78 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 8 |
| 311 | 87.79 | humidity | 50 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 314 | 87.80 | radiation | 10 | 43200 | < th | dose dependent | rect. | 24 | 6 |
| 323 | 87.81 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 327 | 87.82 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 386 | 87.90 | radiation | 10 | 43200 | < th | dose dependent | sin | 12 | NA |
| 406 | 87.91 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 20 |
| 407 | 87.92 | radiation | 40 | 43200 | < th | dose independent | sin | 14 | NA |
| 447 | 87.95 | humidity | 50 | 43200 | < th | dose dependent | sin | 7 | NA |
| 502 | 87.99 | radiation | 20 | 90 | < th | dose independent | rect. | 17 | 16 |
| 504 | 87.99 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 523 | 88.04 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 530 | 88.05 | humidity | 50 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 546 | 88.08 | radiation | 40 | 43200 | < th | dose dependent | sin | 13 | NA |
| 567 | 88.09 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 580 | 88.10 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 3 |
| 603 | 88.11 | radiation | 1 | 43200 | > th | dose dependent | sin | 13 | NA |
| 604 | 88.11 | radiation | 30 | 43200 | > th | dose dependent | sin | 13 | NA |
| 613 | 88.12 | humidity | 50 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 628 | 88.14 | humidity | 50 | 43200 | < th | dose independent | rect. | 17 | 20 |
| 637 | 88.14 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 7 |
| 713 | 88.20 | humidity | 50 | 43200 | < th | dose dependent | rect. | 10 | 10 |
| 735 | 88.21 | humidity | 80 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 754 | 88.22 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 798 | 88.24 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 855 | 88.27 | humidity | 50 | 43200 | > th | dose independent | sin | 8 | NA |
| 920 | 88.29 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |