Os03g0157700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF639 family protein.
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Os03g0157700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF639 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 335.2 | 0.86 | 3.8 | -0.912 | 1.56 | 0.746 | 0.968 | -1.46 | -0.0814 | 21.9 | 22.3 | 1381 | -- | -- |
| 342.78 | 0.862 | 3.75 | -0.613 | 1.57 | 0.855 | 0.864 | -- | 0.0292 | 21.9 | 21.34 | 2691 | -- | -- |
| 338.78 | 0.857 | 3.8 | -0.926 | 1.55 | 0.746 | -- | -1.38 | -0.0778 | 21.9 | 22.3 | 1383 | -- | -- |
| 345.73 | 0.866 | 3.76 | -0.64 | 1.55 | 0.856 | -- | -- | 0.0313 | 21.9 | 21.39 | 2709 | -- | -- |
| 478.34 | 1.02 | 3.77 | -0.996 | -- | 0.901 | -- | -1.39 | -0.143 | -- | 22.4 | 2366 | -- | -- |
| 361.85 | 0.892 | 3.7 | -0.17 | 1.58 | -- | 0.856 | -- | 0.294 | 22 | -- | -- | -- | -- |
| 364.69 | 0.894 | 3.7 | -0.204 | 1.58 | -- | -- | -- | 0.292 | 22 | -- | -- | -- | -- |
| 473.96 | 1.01 | 3.77 | -0.625 | -- | 1.17 | -- | -- | -0.0949 | -- | 25.1 | 2183 | -- | -- |
| 352.06 | 0.874 | 3.74 | -- | 1.54 | 0.601 | -- | -- | 0.109 | 21.9 | 22.71 | 2581 | -- | -- |
| 514.19 | 1.06 | 3.66 | -0.184 | -- | -- | -- | -- | 0.293 | -- | -- | -- | -- | -- |
| 365.79 | 0.895 | 3.69 | -- | 1.57 | -- | -- | -- | 0.314 | 22 | -- | -- | -- | -- |
| 481.91 | 1.02 | 3.71 | -- | -- | 1.03 | -- | -- | 0.0648 | -- | 25 | 2204 | -- | -- |
| 515.08 | 1.06 | 3.65 | -- | -- | -- | -- | -- | 0.313 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 330.29 | temperature | 10 | 90 | > th | dose dependent | sin | 14 | NA |
| 2 | 330.64 | atmosphere | 1005 | 720 | < th | dose independent | rect. | 21 | 1 |
| 3 | 330.91 | temperature | 15 | 10 | > th | dose dependent | sin | 13 | NA |
| 7 | 331.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 10 |
| 8 | 331.58 | temperature | 30 | 10 | < th | dose dependent | sin | 15 | NA |
| 17 | 332.32 | atmosphere | 1005 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 31 | 333.20 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 19 |
| 34 | 333.43 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 11 |
| 41 | 333.58 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 13 |
| 46 | 333.81 | atmosphere | 1005 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 52 | 333.92 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 13 | 18 |
| 54 | 333.96 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 21 |
| 62 | 334.21 | temperature | 20 | 90 | > th | dose independent | rect. | 12 | 21 |
| 67 | 334.28 | temperature | 30 | 90 | < th | dose dependent | rect. | 14 | 15 |
| 70 | 334.38 | temperature | 20 | 270 | > th | dose independent | sin | 12 | NA |
| 81 | 334.59 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 19 |
| 84 | 334.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 89 | 334.68 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 102 | 334.82 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 18 |
| 115 | 334.98 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 124 | 335.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 126 | 335.17 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 146 | 335.39 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 16 |
| 165 | 335.49 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 169 | 335.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 14 |
| 183 | 335.63 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 217 | 335.77 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 14 |
| 240 | 335.95 | temperature | 20 | 1440 | < th | dose independent | rect. | 24 | 6 |
| 254 | 336.01 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 14 | 15 |
| 256 | 336.02 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 15 |
| 274 | 336.10 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 280 | 336.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 7 |
| 311 | 336.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 321 | 336.25 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 346 | 336.34 | atmosphere | 1010 | 30 | < th | dose dependent | sin | 13 | NA |
| 357 | 336.38 | humidity | 90 | 14400 | > th | dose dependent | sin | 12 | NA |
| 394 | 336.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 437 | 336.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 459 | 336.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 470 | 336.64 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 522 | 336.76 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 8 |
| 537 | 336.79 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 565 | 336.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 8 |
| 606 | 336.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 612 | 336.98 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 677 | 337.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 700 | 337.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 11 |
| 701 | 337.20 | wind | 1 | 270 | < th | dose dependent | rect. | 11 | 15 |
| 712 | 337.22 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 739 | 337.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 767 | 337.35 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 20 |
| 770 | 337.36 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 814 | 337.42 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 954 | 337.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 16 |
| 979 | 337.75 | wind | 1 | 270 | < th | dose dependent | rect. | 22 | 4 |