Os03g0156000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Alpha-expansin OsEXPA19.
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Os03g0156000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Alpha-expansin OsEXPA19.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 497.5 | 1.05 | 4.09 | -2.39 | 0.324 | 1.3 | -0.611 | -5.22 | -1.1 | 3.55 | 25.71 | 1334 | -- | -- |
| 505.81 | 1.05 | 3.94 | -1.04 | 0.324 | 0.791 | -0.802 | -- | -0.836 | 3.84 | 24.4 | 1338 | -- | -- |
| 497.87 | 1.04 | 4.1 | -2.48 | 0.325 | 1.39 | -- | -5.99 | -1.11 | 4.62 | 25.81 | 1253 | -- | -- |
| 507.27 | 1.05 | 3.94 | -1.02 | 0.316 | 0.815 | -- | -- | -0.839 | 3.95 | 24.4 | 1340 | -- | -- |
| 503.16 | 1.04 | 4.1 | -2.43 | -- | 1.42 | -- | -5.67 | -1.11 | -- | 25.6 | 1251 | -- | -- |
| 530.51 | 1.08 | 3.91 | -0.755 | 0.413 | -- | -0.638 | -- | -0.716 | 3.14 | -- | -- | -- | -- |
| 531.74 | 1.08 | 3.9 | -0.742 | 0.417 | -- | -- | -- | -0.713 | 3.52 | -- | -- | -- | -- |
| 511.96 | 1.05 | 3.94 | -1.02 | -- | 0.909 | -- | -- | -0.852 | -- | 23.9 | 1246 | -- | -- |
| 532.15 | 1.07 | 3.9 | -- | 0.319 | 0.579 | -- | -- | -0.672 | 3.84 | 25.19 | 1340 | -- | -- |
| 541.45 | 1.09 | 3.91 | -0.725 | -- | -- | -- | -- | -0.702 | -- | -- | -- | -- | -- |
| 546.25 | 1.09 | 3.89 | -- | 0.402 | -- | -- | -- | -0.63 | 3.53 | -- | -- | -- | -- |
| 537.35 | 1.08 | 3.9 | -- | -- | 0.672 | -- | -- | -0.682 | -- | 24.8 | 1231 | -- | -- |
| 555.29 | 1.1 | 3.89 | -- | -- | -- | -- | -- | -0.621 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 488.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 3 | 489.67 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 9 | 492.65 | radiation | 1 | 1440 | < th | dose dependent | rect. | 21 | 8 |
| 13 | 494.26 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 14 | 494.26 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 7 |
| 19 | 494.49 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 21 | 494.54 | radiation | 20 | 43200 | < th | dose independent | rect. | 17 | 12 |
| 32 | 495.62 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 33 | 495.93 | radiation | 10 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 45 | 496.05 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 46 | 496.05 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 9 |
| 49 | 496.09 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 51 | 496.11 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 15 |
| 53 | 496.12 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 11 |
| 54 | 496.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 60 | 496.18 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 65 | 496.29 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 75 | 496.77 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 80 | 496.83 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 88 | 496.89 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 90 | 496.91 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 114 | 497.11 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 120 | 497.30 | radiation | 40 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 121 | 497.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 8 |
| 124 | 497.39 | radiation | 40 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 128 | 497.44 | temperature | 15 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 129 | 497.45 | radiation | 40 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 140 | 497.52 | radiation | 20 | 43200 | < th | dose independent | rect. | 3 | 4 |
| 148 | 497.56 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 150 | 497.58 | radiation | 20 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 153 | 497.59 | radiation | 20 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 169 | 497.71 | radiation | 40 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 173 | 497.75 | radiation | 20 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 177 | 497.77 | temperature | 15 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 186 | 497.81 | wind | 9 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 199 | 497.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 207 | 497.98 | wind | 9 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 210 | 498.01 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 227 | 498.08 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 228 | 498.08 | radiation | 40 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 269 | 498.27 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 298 | 498.36 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 310 | 498.36 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 365 | 498.67 | radiation | 40 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 368 | 498.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 12 |
| 394 | 498.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 13 |
| 396 | 498.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 18 |
| 425 | 498.83 | radiation | 40 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 441 | 498.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 11 |
| 458 | 498.92 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 8 |
| 493 | 498.96 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 3 |
| 511 | 499.02 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 593 | 499.24 | radiation | 30 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 668 | 499.41 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 692 | 499.46 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 695 | 499.47 | radiation | 40 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 710 | 499.53 | radiation | 10 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 746 | 499.65 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 755 | 499.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 761 | 499.75 | temperature | 15 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 763 | 499.76 | wind | 1 | 43200 | < th | dose dependent | rect. | 13 | 6 |
| 765 | 499.77 | temperature | 15 | 43200 | > th | dose independent | rect. | 9 | 3 |
| 795 | 499.87 | radiation | 10 | 10 | < th | dose independent | rect. | 12 | 1 |
| 852 | 500.11 | temperature | 15 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 854 | 500.11 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 12 |
| 856 | 500.13 | radiation | 1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 858 | 500.14 | wind | 1 | 43200 | < th | dose independent | rect. | 13 | 6 |
| 882 | 500.24 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 947 | 500.49 | radiation | 1 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 967 | 500.56 | humidity | 60 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 968 | 500.56 | wind | 1 | 43200 | < th | dose dependent | rect. | 20 | 1 |