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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0155300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Alpha-expansin precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.36 (0.0473) R2 : 0.12
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.885 (0.123) R2dE : 0.109 R2E : 0.0866
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.352 (0.1) R2dN8 : 0.0331 R2N8 : 0.0111
σ : 0.889
deviance : 364.17
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 427.4
memory length : 282
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.87
open length of G : 3.05

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
335.64 0.861 3.24 0.287 3.46 -2.36 7.22 -5.67 -0.268 6.82 37.08 287 21.9 13.2
358.94 0.882 3.23 0.362 3.32 -2.25 0.841 -- -0.258 7.09 178.4 329 21.5 13.5
349.24 0.87 3.23 0.354 3.29 -2.32 -- -0.316 -0.311 6.35 22.69 332 21.5 12.7
348.92 0.87 3.23 0.467 3.3 -2.19 -- -- -0.207 6.48 36.12 311 21.5 13.3
393.43 0.929 3.31 0.4 -- 0.254 -- -0.646 -0.229 -- 22.69 332 21.5 12.7
372.17 0.904 3.29 0.388 0.752 -- 0.735 -- -0.23 7.03 -- -- -- --
373.38 0.905 3.29 0.4 0.759 -- -- -- -0.233 6.74 -- -- -- --
362.36 0.887 3.34 0.363 -- 0.813 -- -- -0.2 -- 226.4 315 2.21 3.87
349.62 0.871 3.23 -- 3.24 -2.2 -- -- -0.253 6.5 40 281 21.5 13.5
403.48 0.939 3.3 0.417 -- -- -- -- -0.218 -- -- -- -- --
377.59 0.909 3.3 -- 0.764 -- -- -- -0.277 6.71 -- -- -- --
364.17 0.889 3.36 -- -- 0.885 -- -- -0.352 -- 427.4 282 2.87 3.05
408.07 0.943 3.31 -- -- -- -- -- -0.264 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 339.64 radiation 40 270 < th dose independent rect. 22 13
2 340.19 atmosphere 1010 720 < th dose dependent rect. 2 2
6 341.46 radiation 40 270 < th dose independent rect. 7 20
8 341.82 radiation 40 90 < th dose independent rect. 9 18
10 343.25 radiation 40 270 < th dose independent rect. 7 9
13 343.48 radiation 20 270 < th dose independent rect. 7 3
17 343.63 atmosphere 1015 270 < th dose dependent rect. 2 5
26 344.51 atmosphere 1005 720 < th dose independent rect. 2 1
33 344.95 atmosphere 1015 270 < th dose dependent rect. 1 7
46 345.64 atmosphere 995 270 > th dose dependent rect. 22 13
52 346.16 radiation 30 270 < th dose dependent rect. 7 3
61 346.67 radiation 40 270 < th dose dependent rect. 21 14
64 346.71 atmosphere 995 720 > th dose dependent rect. 23 4
69 346.82 atmosphere 1015 720 < th dose dependent rect. 19 12
91 347.42 temperature 30 90 < th dose independent rect. 23 13
92 347.43 radiation 40 270 < th dose independent rect. 9 1
134 348.05 atmosphere 1015 90 < th dose dependent rect. 3 20
137 348.10 atmosphere 1015 90 < th dose dependent rect. 3 11
143 348.25 radiation 40 270 < th dose independent rect. 19 22
145 348.27 atmosphere 1015 270 < th dose dependent rect. 2 18
161 348.44 atmosphere 1015 270 < th dose dependent rect. 1 20
171 348.66 atmosphere 1000 720 > th dose independent rect. 23 11
181 348.80 atmosphere 1015 720 < th dose dependent sin 10 NA
188 348.82 atmosphere 1015 10 < th dose dependent rect. 5 17
190 348.84 atmosphere 1000 270 > th dose independent rect. 22 13
208 349.01 temperature 30 30 < th dose independent rect. 8 4
220 349.10 atmosphere 1000 270 > th dose independent rect. 6 21
227 349.19 radiation 20 270 > th dose dependent rect. 6 2
305 349.79 radiation 40 720 < th dose dependent rect. 23 9
322 349.88 radiation 20 720 < th dose independent rect. 23 10
332 349.94 radiation 40 270 < th dose dependent rect. 7 20
335 349.97 radiation 40 270 < th dose independent rect. 7 6
336 349.97 humidity 80 270 > th dose dependent rect. 3 3
340 350.01 atmosphere 1015 10 < th dose dependent rect. 5 15
360 350.13 radiation 40 90 > th dose independent rect. 12 23
384 350.29 wind 3 270 < th dose dependent rect. 2 5
390 350.34 temperature 30 1440 < th dose independent rect. 22 11
406 350.45 temperature 30 1440 < th dose independent rect. 19 14
426 350.57 atmosphere 995 10 > th dose dependent rect. 8 21
457 350.75 atmosphere 995 30 > th dose dependent rect. 1 11
477 350.87 humidity 80 270 > th dose independent rect. 3 3
494 350.98 atmosphere 1005 720 > th dose independent rect. 23 4
562 351.36 atmosphere 1000 270 > th dose independent rect. 6 10
588 351.49 radiation 20 10 > th dose dependent rect. 12 22
590 351.50 atmosphere 995 90 > th dose dependent rect. 7 21
637 351.68 radiation 40 270 > th dose independent sin 11 NA
647 351.73 temperature 30 1440 < th dose independent rect. 6 3
677 351.86 atmosphere 1015 10 < th dose dependent rect. 4 4
709 352.02 atmosphere 1015 10 < th dose dependent rect. 12 22
733 352.10 temperature 30 10 < th dose independent rect. 8 21
749 352.17 radiation 40 270 > th dose independent rect. 14 21
762 352.22 atmosphere 1000 30 > th dose independent rect. 23 13
771 352.25 radiation 20 270 > th dose independent rect. 7 1
777 352.26 wind 3 270 < th dose independent rect. 3 3
826 352.33 atmosphere 995 720 > th dose dependent rect. 16 18
838 352.37 atmosphere 995 720 > th dose dependent sin 11 NA
921 352.59 radiation 40 270 < th dose independent sin 9 NA
941 352.66 humidity 70 270 > th dose dependent rect. 8 1
972 352.75 temperature 30 10 < th dose independent rect. 8 7
974 352.76 humidity 70 270 > th dose independent rect. 8 2
978 352.77 atmosphere 1000 270 > th dose independent rect. 7 4
979 352.77 atmosphere 995 720 > th dose dependent rect. 16 12