Os03g0152600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0152600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.36 | 0.4 | 13.4 | -1.19 | 1.37 | 0.884 | 2.09 | -0.839 | -0.217 | 5.42 | 24.02 | 271 | -- | -- |
| 73.97 | 0.401 | 13.4 | -1.17 | 1.3 | 0.965 | 1.67 | -- | -0.207 | 5.53 | 25.55 | 287 | -- | -- |
| 76.07 | 0.406 | 13.4 | -1.25 | 1.53 | 0.741 | -- | 1.94 | -0.257 | 3.7 | 57.55 | 676 | -- | -- |
| 78.75 | 0.413 | 13.4 | -1.2 | 1.4 | 0.927 | -- | -- | -0.21 | 4.35 | 52.85 | 448 | -- | -- |
| 108.58 | 0.485 | 13.4 | -1.12 | -- | 2.36 | -- | 1.03 | -0.0709 | -- | 93.55 | 481 | -- | -- |
| 84.88 | 0.432 | 13.4 | -1.24 | 2 | -- | 1.16 | -- | -0.291 | 4.33 | -- | -- | -- | -- |
| 88.41 | 0.44 | 13.4 | -1.25 | 2.01 | -- | -- | -- | -0.297 | 4.24 | -- | -- | -- | -- |
| 82.88 | 0.424 | 13.4 | -1.16 | -- | 2.08 | -- | -- | -0.186 | -- | 3.965 | 534 | -- | -- |
| 115.66 | 0.501 | 13.4 | -- | 1.19 | 1.15 | -- | -- | -0.0526 | 4.43 | 43.68 | 450 | -- | -- |
| 306.08 | 0.817 | 13.4 | -1.17 | -- | -- | -- | -- | -0.244 | -- | -- | -- | -- | -- |
| 129.83 | 0.533 | 13.4 | -- | 1.98 | -- | -- | -- | -0.158 | 4.26 | -- | -- | -- | -- |
| 117.43 | 0.505 | 13.4 | -- | -- | 2.1 | -- | -- | -0.068 | -- | 2.608 | 548 | -- | -- |
| 342.39 | 0.864 | 13.4 | -- | -- | -- | -- | -- | -0.114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.63 | radiation | 40 | 270 | < th | dose independent | sin | 12 | NA |
| 2 | 67.43 | temperature | 30 | 90 | < th | dose independent | sin | 3 | NA |
| 9 | 68.78 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 11 |
| 14 | 69.32 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 10 |
| 19 | 69.66 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 11 |
| 23 | 69.82 | radiation | 40 | 720 | < th | dose dependent | rect. | 1 | 11 |
| 24 | 69.82 | radiation | 40 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 29 | 70.00 | radiation | 40 | 720 | < th | dose independent | rect. | 2 | 9 |
| 45 | 70.25 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 8 |
| 48 | 70.28 | radiation | 40 | 720 | < th | dose independent | rect. | 19 | 17 |
| 54 | 70.37 | radiation | 40 | 720 | < th | dose dependent | rect. | 23 | 13 |
| 77 | 70.61 | radiation | 20 | 720 | < th | dose independent | rect. | 17 | 18 |
| 79 | 70.65 | radiation | 20 | 720 | < th | dose independent | rect. | 1 | 10 |
| 82 | 70.67 | radiation | 20 | 720 | < th | dose dependent | rect. | 23 | 8 |
| 88 | 70.70 | temperature | 30 | 90 | < th | dose independent | rect. | 23 | 16 |
| 91 | 70.73 | radiation | 40 | 720 | < th | dose dependent | sin | 9 | NA |
| 105 | 70.85 | radiation | 40 | 270 | < th | dose independent | sin | 4 | NA |
| 116 | 70.90 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 7 |
| 135 | 71.00 | temperature | 30 | 270 | < th | dose dependent | sin | 1 | NA |
| 149 | 71.06 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 9 |
| 279 | 71.56 | radiation | 20 | 720 | < th | dose independent | sin | 9 | NA |
| 283 | 71.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 308 | 71.65 | radiation | 40 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 340 | 71.77 | radiation | 10 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 382 | 71.90 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 5 |
| 396 | 71.92 | radiation | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 431 | 72.02 | radiation | 40 | 10 | < th | dose independent | sin | 12 | NA |
| 443 | 72.05 | temperature | 30 | 720 | < th | dose dependent | sin | 4 | NA |
| 473 | 72.12 | radiation | 40 | 270 | < th | dose independent | sin | 17 | NA |
| 536 | 72.25 | radiation | 10 | 720 | < th | dose independent | rect. | 23 | 8 |
| 544 | 72.28 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 13 |
| 561 | 72.32 | radiation | 20 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 589 | 72.35 | radiation | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 603 | 72.37 | radiation | 1 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 635 | 72.43 | radiation | 40 | 270 | < th | dose dependent | sin | 19 | NA |
| 652 | 72.45 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 8 |
| 679 | 72.49 | radiation | 20 | 270 | < th | dose dependent | no | NA | NA |
| 690 | 72.50 | radiation | 20 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 700 | 72.51 | radiation | 40 | 270 | < th | dose dependent | rect. | 10 | 12 |
| 730 | 72.59 | temperature | 30 | 270 | < th | dose independent | rect. | 21 | 16 |
| 844 | 72.79 | radiation | 40 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 847 | 72.80 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 1 |
| 875 | 72.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 2 |
| 940 | 72.97 | wind | 1 | 90 | > th | dose independent | rect. | 18 | 13 |
| 941 | 72.97 | temperature | 10 | 270 | > th | dose dependent | sin | 21 | NA |
| 981 | 73.03 | radiation | 1 | 720 | < th | dose independent | sin | 3 | NA |