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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0152300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Haem peroxidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.2 (0.0245) R2 : 4.28e-07
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.000719 (0.0515) R2dN8 : 5.52e-07 R2N8 : 4.28e-07
σ : 0.461
deviance : 97.42
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
92.06 0.451 3.2 0.128 0.183 0.415 -0.323 -1.34 0.0548 2.77 0.1797 5345 -- --
93.58 0.451 3.19 0.0552 0.19 0.355 -0.31 -- 0.0464 2.7 0.1558 4923 -- --
92.42 0.448 3.2 0.137 0.181 0.405 -- -1.34 0.0558 2.69 0.1605 5344 -- --
93.9 0.451 3.19 0.0548 0.178 0.339 -- -- 0.0389 2.62 0.09988 4533 -- --
94.34 0.452 3.2 0.144 -- 0.395 -- -1.29 0.0568 -- 0.1419 5344 -- --
95.05 0.457 3.2 0.103 0.174 -- -0.288 -- 0.00758 2.83 -- -- -- --
95.33 0.457 3.2 0.11 0.172 -- -- -- 0.00932 2.75 -- -- -- --
95.63 0.455 3.19 0.0605 -- 0.345 -- -- 0.0447 -- 0.2017 4526 -- --
93.96 0.451 3.19 -- 0.174 0.364 -- -- 0.0364 2.71 0.358 4526 -- --
97.05 0.46 3.2 0.117 -- -- -- -- 0.0137 -- -- -- -- --
95.65 0.457 3.2 -- 0.174 -- -- -- -0.0029 2.75 -- -- -- --
95.72 0.456 3.19 -- -- 0.365 -- -- 0.0403 -- 0.3388 4527 -- --
97.42 0.461 3.2 -- -- -- -- -- 0.000719 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.75 temperature 15.0 30 > th dose independent rect. 3 23
3 84.40 wind 3.0 10 < th dose independent rect. 2 1
4 84.44 atmosphere 1015.0 30 < th dose dependent rect. 2 1
6 84.49 wind 5.0 10 < th dose dependent rect. 2 1
10 84.51 wind 1.0 30 > th dose independent rect. 2 1
16 84.52 temperature 10.0 30 > th dose independent rect. 2 1
18 84.52 temperature 30.0 30 < th dose independent rect. 2 1
19 84.52 humidity 50.0 30 > th dose independent rect. 2 1
22 84.52 atmosphere 995.0 30 > th dose independent rect. 2 1
23 84.52 atmosphere 1010.0 30 < th dose independent rect. 2 1
25 84.52 radiation 1.0 30 < th dose independent rect. 2 1
30 84.52 precipitation 0.1 30 < th dose independent rect. 2 1
34 84.52 humidity 50.0 30 > th dose dependent rect. 2 1
37 84.52 radiation 1.0 30 < th dose dependent rect. 2 1
42 84.52 precipitation 0.1 30 < th dose dependent rect. 2 1
44 84.53 temperature 10.0 30 > th dose dependent rect. 2 1
45 84.53 temperature 30.0 30 < th dose dependent rect. 2 1
56 84.58 atmosphere 1005.0 30 > th dose independent rect. 2 1
58 84.59 atmosphere 995.0 30 > th dose dependent rect. 2 1
97 84.71 wind 9.0 30 < th dose independent rect. 3 23
107 85.38 atmosphere 995.0 30 > th dose independent rect. 3 23
112 86.12 precipitation 0.1 30 < th dose independent rect. 3 23
113 86.12 precipitation 0.1 30 < th dose dependent rect. 3 23
120 86.67 radiation 1.0 43200 < th dose dependent rect. 3 1
136 87.00 wind 9.0 1440 < th dose independent rect. 3 1
137 87.00 temperature 10.0 1440 > th dose independent rect. 3 1
140 87.00 temperature 30.0 1440 < th dose independent rect. 3 1
144 87.00 humidity 50.0 1440 > th dose independent rect. 3 1
153 87.00 atmosphere 995.0 1440 > th dose independent rect. 3 1
154 87.00 radiation 1.0 1440 < th dose independent rect. 3 1
174 87.00 temperature 10.0 1440 > th dose independent rect. 4 23
189 87.54 temperature 10.0 30 > th dose dependent rect. 3 23
193 87.94 radiation 10.0 30 < th dose independent rect. 3 23
194 87.95 radiation 20.0 30 < th dose dependent rect. 3 23
198 88.06 humidity 50.0 30 > th dose independent rect. 3 23
206 88.44 atmosphere 1015.0 30 < th dose independent rect. 3 23
207 88.45 wind 5.0 10 < th dose dependent rect. 22 5
221 88.97 humidity 70.0 30 > th dose dependent rect. 22 5
227 89.14 wind 7.0 30 < th dose dependent rect. 20 7
229 89.16 wind 5.0 30 < th dose independent rect. 22 5
239 89.26 wind 1.0 30 < th dose independent rect. 23 4
243 89.31 temperature 15.0 30 > th dose dependent rect. 3 4
245 89.32 atmosphere 995.0 30 > th dose independent rect. 3 19
250 89.37 temperature 20.0 30 > th dose independent rect. 3 4
251 89.37 temperature 15.0 270 > th dose independent rect. 4 23
257 89.43 humidity 80.0 30 > th dose independent rect. 22 5
264 89.48 humidity 90.0 90 < th dose independent rect. 2 1
272 89.51 atmosphere 995.0 30 > th dose dependent rect. 22 5
280 89.58 radiation 40.0 30 < th dose dependent rect. 3 8
290 89.63 humidity 80.0 270 > th dose dependent rect. 3 1
297 89.67 precipitation 0.1 30 < th dose independent rect. 22 5
298 89.67 wind 9.0 30 < th dose independent rect. 3 19
299 89.67 precipitation 0.1 30 < th dose dependent rect. 22 5
305 89.71 temperature 10.0 30 > th dose independent rect. 22 5
306 89.71 temperature 30.0 30 < th dose independent rect. 22 5
307 89.71 humidity 50.0 30 > th dose independent rect. 22 5
310 89.71 atmosphere 995.0 30 > th dose independent rect. 22 5
311 89.71 radiation 1.0 30 < th dose independent rect. 22 5
318 89.71 temperature 10.0 30 > th dose independent rect. 3 19
320 89.71 atmosphere 1015.0 30 < th dose independent rect. 3 19
321 89.71 radiation 1.0 30 < th dose dependent rect. 22 5
333 89.75 temperature 10.0 30 > th dose dependent rect. 3 19
337 89.77 humidity 90.0 270 > th dose independent rect. 3 1
340 89.78 radiation 30.0 30 < th dose dependent rect. 3 6
344 89.79 atmosphere 1015.0 30 < th dose independent rect. 22 5
350 89.83 humidity 60.0 30 > th dose dependent rect. 3 6
353 89.85 precipitation 0.1 30 < th dose independent rect. 7 20
354 89.85 precipitation 0.1 30 < th dose dependent rect. 7 20
358 89.87 wind 9.0 30 < th dose dependent rect. 14 13
383 89.89 humidity 50.0 30 > th dose dependent rect. 3 4
389 89.91 humidity 60.0 30 > th dose dependent rect. 20 7
400 89.97 radiation 20.0 30 < th dose independent rect. 3 6
404 89.97 atmosphere 995.0 30 > th dose dependent rect. 20 7
414 89.99 wind 9.0 30 < th dose independent rect. 3 4
415 89.99 temperature 10.0 30 > th dose independent rect. 3 4
417 89.99 temperature 30.0 30 < th dose independent rect. 3 4
418 89.99 humidity 50.0 30 > th dose independent rect. 3 4
421 89.99 atmosphere 995.0 30 > th dose independent rect. 3 4
422 89.99 atmosphere 1015.0 30 < th dose independent rect. 3 4
426 89.99 wind 1.0 30 < th dose independent rect. 14 13
427 89.99 precipitation 0.1 30 < th dose independent rect. 3 19
428 89.99 temperature 10.0 30 > th dose independent rect. 7 20
432 89.99 precipitation 0.1 30 < th dose dependent rect. 3 19
451 90.01 radiation 10.0 10 < th dose independent rect. 3 19
462 90.02 wind 9.0 30 < th dose dependent rect. 3 4
471 90.04 atmosphere 995.0 30 > th dose independent rect. 3 17
479 90.05 radiation 40.0 30 < th dose dependent rect. 3 4
482 90.06 wind 9.0 30 < th dose independent rect. 7 20
496 90.11 temperature 20.0 30 > th dose independent rect. 3 6
529 90.16 precipitation 0.1 30 < th dose independent rect. 3 4
539 90.16 precipitation 0.1 30 < th dose dependent rect. 3 4
540 90.16 temperature 30.0 30 < th dose dependent rect. 22 5
550 90.18 temperature 10.0 30 > th dose dependent rect. 3 6
553 90.18 wind 9.0 30 < th dose dependent rect. 3 19
563 90.19 humidity 50.0 30 > th dose dependent rect. 3 8
567 90.20 humidity 80.0 30 > th dose independent rect. 20 7
577 90.22 temperature 10.0 1440 > th dose independent rect. 23 5
580 90.22 temperature 30.0 1440 < th dose independent rect. 23 5
584 90.22 humidity 50.0 1440 > th dose independent rect. 23 5
593 90.22 atmosphere 995.0 1440 > th dose independent rect. 23 5
594 90.22 radiation 1.0 1440 < th dose independent rect. 23 5
616 90.22 temperature 10.0 1440 > th dose independent rect. 4 19
622 90.22 radiation 1.0 1440 < th dose dependent rect. 23 5
654 90.26 wind 9.0 30 < th dose dependent rect. 3 23
694 90.30 radiation 30.0 30 < th dose independent rect. 3 8
699 90.30 radiation 20.0 10 < th dose dependent rect. 3 19
709 90.32 humidity 70.0 30 > th dose independent rect. 3 6
715 90.32 wind 7.0 30 < th dose dependent rect. 3 6
728 90.35 radiation 40.0 1440 < th dose independent rect. 4 4
740 90.35 atmosphere 1010.0 270 < th dose independent rect. 15 14
754 90.36 wind 9.0 1440 < th dose independent rect. 23 5
784 90.40 atmosphere 1005.0 30 > th dose independent rect. 22 5
794 90.42 wind 3.0 30 < th dose independent rect. 3 6
805 90.42 wind 9.0 30 < th dose dependent rect. 3 10
832 90.46 wind 9.0 1440 < th dose independent rect. 4 4
833 90.46 temperature 10.0 1440 > th dose independent rect. 4 4
836 90.46 temperature 30.0 1440 < th dose independent rect. 4 4
840 90.46 humidity 50.0 1440 > th dose independent rect. 4 4
845 90.46 atmosphere 995.0 1440 > th dose independent rect. 4 4
846 90.46 atmosphere 1015.0 1440 < th dose independent rect. 4 4
849 90.46 temperature 10.0 1440 > th dose independent rect. 8 20
868 90.47 wind 1.0 30 < th dose independent rect. 8 19
886 90.49 atmosphere 1000.0 30 > th dose independent rect. 3 6
906 90.50 atmosphere 1015.0 30 < th dose independent rect. 7 20
922 90.52 precipitation 0.1 30 < th dose independent rect. 9 18
925 90.52 precipitation 0.1 30 < th dose dependent rect. 9 18
953 90.56 temperature 10.0 30 > th dose dependent rect. 3 17
966 90.58 wind 9.0 30 < th dose dependent rect. 3 17
979 90.61 temperature 15.0 720 > th dose independent rect. 11 16
995 90.64 atmosphere 1015.0 1440 < th dose independent rect. 3 1
996 90.64 wind 9.0 30 < th dose independent rect. 3 6
997 90.64 temperature 10.0 30 > th dose independent rect. 3 6
999 90.64 temperature 30.0 30 < th dose independent rect. 3 6
1000 90.64 humidity 50.0 30 > th dose independent rect. 3 6