Os03g0152100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : E2F dimerization factor.
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Os03g0152100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : E2F dimerization factor.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.84 | 0.243 | 8.89 | -0.334 | 0.545 | -0.835 | -0.201 | -0.506 | 0.0335 | 7.19 | 23.75 | 275 | -- | -- |
| 26.95 | 0.242 | 8.88 | -0.265 | 0.546 | -0.859 | -0.119 | -- | 0.0505 | 7.18 | 23.76 | 275 | -- | -- |
| 26.91 | 0.242 | 8.89 | -0.315 | 0.551 | -0.841 | -- | -0.365 | 0.0457 | 7.24 | 23.56 | 269 | -- | -- |
| 26.97 | 0.242 | 8.88 | -0.264 | 0.542 | -0.882 | -- | -- | 0.0554 | 7.32 | 23.67 | 265 | -- | -- |
| 36.35 | 0.281 | 8.87 | -0.0344 | -- | -1.3 | -- | 0.852 | 0.13 | -- | 24.26 | 394 | -- | -- |
| 40.4 | 0.298 | 8.9 | -0.429 | 0.897 | -- | 0.137 | -- | -0.0525 | 6.31 | -- | -- | -- | -- |
| 40.45 | 0.298 | 8.9 | -0.428 | 0.898 | -- | -- | -- | -0.053 | 6.3 | -- | -- | -- | -- |
| 36.4 | 0.281 | 8.89 | -0.188 | -- | -1.26 | -- | -- | 0.0937 | -- | 24.2 | 389 | -- | -- |
| 28.65 | 0.249 | 8.88 | -- | 0.544 | -0.922 | -- | -- | 0.0871 | 7.35 | 23.45 | 256 | -- | -- |
| 82.27 | 0.424 | 8.92 | -0.404 | -- | -- | -- | -- | -0.0336 | -- | -- | -- | -- | -- |
| 45.27 | 0.315 | 8.89 | -- | 0.892 | -- | -- | -- | -0.00534 | 6.33 | -- | -- | -- | -- |
| 37.29 | 0.284 | 8.88 | -- | -- | -1.29 | -- | -- | 0.12 | -- | 24.1 | 391 | -- | -- |
| 86.57 | 0.434 | 8.91 | -- | -- | -- | -- | -- | 0.0112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.40 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 10 | 27.10 | temperature | 25 | 720 | > th | dose dependent | sin | 7 | NA |
| 11 | 27.18 | temperature | 25 | 270 | > th | dose dependent | sin | 1 | NA |
| 13 | 27.21 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 15 |
| 17 | 27.30 | temperature | 25 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 19 | 27.34 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 30 | 27.37 | temperature | 25 | 270 | > th | dose dependent | no | NA | NA |
| 70 | 27.56 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 22 |
| 73 | 27.58 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 17 |
| 89 | 27.62 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 19 |
| 102 | 27.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 2 |
| 112 | 27.71 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 17 |
| 126 | 27.73 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 149 | 27.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 15 |
| 172 | 27.85 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 221 | 27.92 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 229 | 27.93 | temperature | 25 | 720 | > th | dose dependent | rect. | 6 | 7 |
| 264 | 27.99 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 20 |
| 268 | 28.00 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 270 | 28.00 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 310 | 28.04 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |
| 334 | 28.08 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 8 |
| 337 | 28.08 | temperature | 30 | 4320 | < th | dose independent | rect. | 19 | 19 |
| 356 | 28.09 | temperature | 30 | 4320 | < th | dose independent | rect. | 8 | 6 |
| 362 | 28.09 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 16 |
| 392 | 28.11 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 437 | 28.15 | temperature | 30 | 14400 | > th | dose independent | sin | 11 | NA |
| 438 | 28.15 | temperature | 30 | 14400 | < th | dose independent | sin | 11 | NA |
| 439 | 28.15 | temperature | 30 | 4320 | < th | dose independent | sin | 6 | NA |
| 475 | 28.17 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 477 | 28.17 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 9 |
| 489 | 28.18 | temperature | 25 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 490 | 28.18 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 512 | 28.19 | temperature | 30 | 4320 | > th | dose independent | rect. | 8 | 6 |
| 527 | 28.19 | temperature | 25 | 4320 | > th | dose dependent | sin | 7 | NA |
| 541 | 28.20 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 641 | 28.24 | temperature | 30 | 4320 | > th | dose independent | sin | 6 | NA |
| 643 | 28.24 | temperature | 25 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 682 | 28.27 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 729 | 28.28 | temperature | 25 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 908 | 28.39 | temperature | 30 | 270 | < th | dose independent | sin | 1 | NA |
| 956 | 28.42 | temperature | 30 | 14400 | > th | dose independent | no | NA | NA |
| 959 | 28.42 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 11 |