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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0150500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Phosphate transporter 6.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.5 (0.0557) R2 : 0.118
β1 : -0.308 (0.207) R2dD : 0.00483 R2D : -0.0245
β2 : -- (--) R2dC : -- R2C : --
β3 : 44.1 (7.72) R2dE : 3.73 R2E : -3.83
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 208 (35.5) R2dD*E : 3.91 R2D*E : -3.69
γ1 : -0.496 (0.114) R2dN8 : 0.0491 R2N8 : 0.02
σ : 1
deviance : 461.43
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 7.038
memory length : 29
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19.1
open length of G : 2.01

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
450.99 0.989 3.49 -0.28 0.394 44.5 -0.749 208 -0.502 8.48 7 30 19 1
484.38 1.03 3.4 -0.657 0.325 -0.601 -1.24 -- -0.509 8.55 7 30 19 1
452.67 0.991 3.49 -0.307 0.401 44.5 -- 208 -0.502 8.17 7.042 28 19 1.17
489.33 1.03 3.4 -0.681 0.319 -0.688 -- -- -0.51 8.23 7 75 18.9 2.07
461.43 1 3.5 -0.308 -- 44.1 -- 208 -0.496 -- 7.038 29 19.1 2.01
484.74 1.03 3.4 -0.651 0.331 -- -1.27 -- -0.507 8.53 -- -- -- --
489.88 1.04 3.4 -0.692 0.336 -- -- -- -0.507 8.28 -- -- -- --
490.6 1.03 3.42 -0.698 -- -0.731 -- -- -0.537 -- 6.81 872 17.6 3.1
500.3 1.04 3.38 -- 0.317 0.739 -- -- -0.458 8.33 6.601 6 19.9 1.41
496.13 1.04 3.41 -0.69 -- -- -- -- -0.504 -- -- -- -- --
502.51 1.05 3.38 -- 0.333 -- -- -- -0.43 8.43 -- -- -- --
505.95 1.05 3.39 -- -- -0.435 -- -- -0.434 -- 6 866 17 4
508.69 1.05 3.39 -- -- -- -- -- -0.427 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 450.99 wind 7.0 30 > th dose independent rect. 19 1
5 454.90 atmosphere 1000.0 90 < th dose dependent rect. 7 3
6 454.91 wind 7.0 30 > th dose dependent rect. 19 1
17 455.65 atmosphere 1000.0 10 < th dose dependent rect. 7 4
26 456.14 atmosphere 1000.0 270 < th dose dependent rect. 6 1
32 457.68 wind 3.0 90 < th dose dependent rect. 2 1
37 458.84 atmosphere 1000.0 10 > th dose independent rect. 3 23
38 458.98 wind 1.0 270 < th dose independent rect. 5 2
40 459.11 radiation 1.0 90 > th dose dependent rect. 5 2
41 459.17 wind 1.0 270 < th dose dependent rect. 5 2
43 459.24 radiation 1.0 90 > th dose dependent rect. 18 13
45 459.26 atmosphere 1000.0 90 < th dose independent rect. 7 3
47 459.35 temperature 15.0 90 > th dose dependent rect. 5 4
58 459.65 temperature 20.0 90 > th dose independent rect. 3 5
59 459.72 temperature 20.0 90 > th dose independent rect. 5 3
60 459.87 atmosphere 1005.0 90 > th dose dependent rect. 2 1
62 459.94 wind 5.0 10 < th dose independent rect. 2 1
65 460.01 atmosphere 1000.0 10 > th dose independent rect. 2 1
66 460.08 wind 7.0 10 < th dose dependent rect. 2 1
70 460.15 temperature 15.0 10 > th dose dependent rect. 6 3
71 460.19 atmosphere 995.0 10 > th dose dependent rect. 2 1
74 460.27 wind 1.0 10 > th dose independent rect. 19 14
77 460.33 humidity 80.0 10 > th dose dependent rect. 2 1
79 460.36 temperature 30.0 10 < th dose independent rect. 9 21
81 460.38 temperature 30.0 30 < th dose dependent rect. 2 1
83 460.45 temperature 25.0 10 < th dose independent rect. 2 1
87 460.50 temperature 10.0 10 > th dose independent rect. 2 1
90 460.50 humidity 50.0 10 > th dose independent rect. 2 1
94 460.50 atmosphere 1010.0 10 < th dose independent rect. 2 1
96 460.50 radiation 1.0 10 < th dose independent rect. 2 1
101 460.50 precipitation 0.1 10 < th dose independent rect. 2 1
103 460.50 temperature 10.0 10 > th dose independent rect. 3 23
104 460.50 radiation 1.0 10 < th dose dependent rect. 2 1
109 460.50 precipitation 0.1 10 < th dose dependent rect. 2 1
112 460.54 humidity 90.0 10 > th dose independent rect. 2 1
113 460.59 atmosphere 1000.0 10 < th dose independent rect. 6 5
117 460.62 atmosphere 1000.0 270 < th dose independent rect. 6 1
128 460.78 temperature 10.0 10 > th dose dependent rect. 2 1
140 460.86 wind 1.0 30 > th dose independent rect. 2 1
170 460.93 atmosphere 1015.0 30 < th dose dependent rect. 2 1
177 461.09 temperature 25.0 90 > th dose independent rect. 2 1
195 461.35 temperature 25.0 90 > th dose dependent rect. 2 1
201 461.48 atmosphere 1015.0 270 < th dose dependent rect. 4 4
204 461.55 temperature 15.0 10 > th dose dependent rect. 4 5
205 461.58 wind 9.0 1440 < th dose independent rect. 3 1
206 461.58 temperature 10.0 1440 > th dose independent rect. 3 1
209 461.58 temperature 30.0 1440 < th dose independent rect. 3 1
213 461.58 humidity 50.0 1440 > th dose independent rect. 3 1
222 461.58 atmosphere 995.0 1440 > th dose independent rect. 3 1
223 461.58 radiation 1.0 1440 < th dose independent rect. 3 1
243 461.58 temperature 10.0 1440 > th dose independent rect. 4 23
246 461.58 radiation 1.0 1440 < th dose dependent rect. 3 1
262 461.66 wind 3.0 270 < th dose dependent rect. 4 4
284 461.98 humidity 90.0 10 < th dose independent rect. 6 3
307 462.34 humidity 50.0 10 > th dose independent rect. 3 23
310 462.38 temperature 30.0 10 < th dose independent rect. 9 19
319 462.58 precipitation 0.1 10 < th dose independent rect. 9 21
320 462.58 precipitation 0.1 10 < th dose dependent rect. 9 21
324 462.71 humidity 80.0 270 > th dose independent rect. 4 3
340 463.08 humidity 80.0 270 > th dose independent rect. 3 5
348 463.26 radiation 10.0 30 > th dose independent rect. 16 17
350 463.27 wind 7.0 10 < th dose dependent rect. 6 3
360 463.41 radiation 1.0 90 > th dose independent rect. 6 1
364 463.51 precipitation 0.1 30 < th dose independent rect. 3 23
365 463.51 precipitation 0.1 30 < th dose dependent rect. 3 23
372 463.56 radiation 10.0 30 > th dose independent rect. 6 3
391 463.60 atmosphere 1005.0 720 > th dose independent rect. 4 2
407 463.82 wind 5.0 10 < th dose independent rect. 6 3
426 464.02 temperature 20.0 90 < th dose independent rect. 16 3
463 464.21 temperature 20.0 90 < th dose dependent rect. 16 3
470 464.29 wind 1.0 10 > th dose independent rect. 11 23
477 464.34 wind 9.0 30 < th dose independent rect. 9 21
491 464.48 radiation 40.0 10 < th dose independent rect. 6 3
512 464.66 temperature 25.0 720 > th dose dependent rect. 3 4
519 464.72 radiation 40.0 90 < th dose independent rect. 5 4
550 464.82 atmosphere 1000.0 270 > th dose dependent rect. 4 1
554 464.84 humidity 60.0 90 > th dose independent rect. 5 4
559 464.86 temperature 10.0 10 > th dose independent rect. 6 3
561 464.86 temperature 30.0 10 < th dose independent rect. 6 3
562 464.86 humidity 50.0 10 > th dose independent rect. 6 3
564 464.86 atmosphere 995.0 10 > th dose independent rect. 6 3
565 464.86 atmosphere 1015.0 10 < th dose independent rect. 6 3
566 464.86 precipitation 0.1 10 < th dose independent rect. 6 3
567 464.86 temperature 10.0 10 > th dose independent rect. 9 21
568 464.86 precipitation 0.1 10 < th dose dependent rect. 6 3
603 464.96 atmosphere 1000.0 30 > th dose dependent rect. 4 5
605 464.98 atmosphere 1005.0 90 > th dose independent rect. 4 12
607 465.00 temperature 30.0 10 < th dose independent rect. 9 10
624 465.09 wind 1.0 10 > th dose independent rect. 6 3
638 465.12 wind 9.0 10 < th dose dependent rect. 9 21
655 465.22 humidity 50.0 270 > th dose dependent rect. 3 5
658 465.23 atmosphere 1015.0 10 < th dose dependent rect. 6 3
671 465.32 temperature 10.0 90 > th dose independent rect. 5 4
674 465.32 atmosphere 995.0 90 > th dose independent rect. 5 4
675 465.32 atmosphere 1015.0 90 < th dose independent rect. 5 4
677 465.32 temperature 10.0 90 > th dose independent rect. 9 20
681 465.35 wind 1.0 270 < th dose independent rect. 3 4
682 465.35 precipitation 0.1 90 < th dose independent rect. 5 4
683 465.35 precipitation 0.1 90 < th dose dependent rect. 5 4
716 465.41 precipitation 0.1 10 > th dose independent rect. 19 1
726 465.41 precipitation 0.1 10 > th dose dependent rect. 19 1
752 465.53 atmosphere 995.0 10 > th dose independent rect. 9 21
753 465.54 precipitation 0.1 10 < th dose independent rect. 9 19
754 465.54 precipitation 0.1 10 < th dose dependent rect. 9 19
756 465.55 wind 9.0 270 < th dose independent rect. 7 21
766 465.63 humidity 90.0 90 > th dose independent rect. 16 1
767 465.63 humidity 90.0 90 > th dose dependent rect. 16 1
783 465.64 wind 9.0 10 < th dose dependent rect. 9 19
784 465.65 humidity 90.0 10 < th dose independent rect. 4 5
792 465.70 wind 9.0 270 < th dose independent rect. 3 5
793 465.70 temperature 10.0 270 > th dose independent rect. 3 5
795 465.70 temperature 30.0 270 < th dose independent rect. 3 5
796 465.70 humidity 50.0 270 > th dose independent rect. 3 5
798 465.70 atmosphere 995.0 270 > th dose independent rect. 3 5
799 465.70 atmosphere 1015.0 270 < th dose independent rect. 3 5
802 465.71 temperature 10.0 1440 > th dose independent rect. 7 3
805 465.71 atmosphere 995.0 1440 > th dose independent rect. 7 3
806 465.71 atmosphere 1015.0 1440 < th dose independent rect. 7 3
807 465.71 temperature 25.0 720 > th dose independent rect. 3 4
808 465.71 temperature 10.0 1440 > th dose independent rect. 10 21
817 465.74 humidity 50.0 270 > th dose dependent rect. 4 3
820 465.76 temperature 30.0 270 < th dose independent rect. 21 18
849 465.95 radiation 30.0 90 < th dose independent rect. 6 1
863 466.01 temperature 10.0 90 > th dose independent rect. 6 1
865 466.01 temperature 30.0 90 < th dose independent rect. 6 1
866 466.01 humidity 50.0 90 > th dose independent rect. 6 1
868 466.01 atmosphere 995.0 90 > th dose independent rect. 6 1
869 466.01 atmosphere 1015.0 90 < th dose independent rect. 6 1
871 466.01 precipitation 0.1 90 < th dose independent rect. 6 1
873 466.01 radiation 40.0 270 < th dose independent rect. 3 5
874 466.01 temperature 10.0 90 > th dose independent rect. 7 23
875 466.01 precipitation 0.1 90 < th dose dependent rect. 6 1
877 466.03 wind 1.0 10 > th dose independent rect. 4 5
888 466.11 temperature 30.0 270 < th dose independent rect. 22 16
930 466.25 precipitation 0.1 270 < th dose independent rect. 3 5
932 466.25 precipitation 0.1 270 < th dose dependent rect. 3 5
939 466.29 wind 3.0 270 < th dose independent rect. 3 6
943 466.30 radiation 20.0 270 < th dose independent rect. 4 3
945 466.30 wind 5.0 10 < th dose dependent rect. 9 21
952 466.36 wind 5.0 10 < th dose dependent rect. 9 19
978 466.41 wind 5.0 10 < th dose independent rect. 9 21
989 466.42 temperature 10.0 270 > th dose independent rect. 7 21