Os03g0149300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os03g0149300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 165.39 | 0.604 | 11.5 | -3.37 | 1.93 | 2.69 | 1.33 | -2.22 | -0.85 | 4.74 | 15.26 | 734 | -- | -- |
| 169.06 | 0.606 | 11.4 | -2.97 | 1.88 | 2.73 | 1.44 | -- | -0.743 | 4.79 | 14.29 | 767 | -- | -- |
| 168.75 | 0.605 | 11.5 | -3.59 | 2.26 | 2.76 | -- | -3.68 | -0.932 | 4.5 | 15.91 | 528 | -- | -- |
| 173.28 | 0.613 | 11.4 | -2.99 | 1.53 | 2.49 | -- | -- | -0.742 | 4.29 | 14.7 | 1047 | -- | -- |
| 302.7 | 0.81 | 11.5 | -3.45 | -- | 2.47 | -- | -1.06 | -0.862 | -- | -2.726 | 2603 | -- | -- |
| 264.21 | 0.762 | 11.4 | -2.26 | 1.71 | -- | 0.812 | -- | -0.322 | 3.52 | -- | -- | -- | -- |
| 266.22 | 0.764 | 11.4 | -2.27 | 1.71 | -- | -- | -- | -0.326 | 3.47 | -- | -- | -- | -- |
| 290.21 | 0.793 | 11.5 | -3.07 | -- | 2.87 | -- | -- | -0.79 | -- | 14.6 | 1153 | -- | -- |
| 377.23 | 0.905 | 11.3 | -- | 1.95 | 1.38 | -- | -- | -0.244 | 4.17 | 11.04 | 527 | -- | -- |
| 430.06 | 0.969 | 11.4 | -2.2 | -- | -- | -- | -- | -0.281 | -- | -- | -- | -- | -- |
| 402.32 | 0.938 | 11.3 | -- | 1.67 | -- | -- | -- | -0.0731 | 3.48 | -- | -- | -- | -- |
| 506.06 | 1.05 | 11.4 | -- | -- | 1.46 | -- | -- | -0.27 | -- | 16.96 | 1131 | -- | -- |
| 557.77 | 1.1 | 11.3 | -- | -- | -- | -- | -- | -0.0367 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 20 |
| 7 | 159.07 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 14 | 8 |
| 8 | 159.10 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 15 | 6 |
| 12 | 159.33 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 11 | 10 |
| 24 | 159.74 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 9 |
| 31 | 159.84 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 33 | 159.86 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 23 | 2 |
| 64 | 160.18 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 20 | NA |
| 83 | 160.34 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 114 | 160.66 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 124 | 160.77 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 135 | 160.82 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 137 | 160.83 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 138 | 160.85 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 21 | NA |
| 172 | 161.00 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 14 | NA |
| 181 | 161.05 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 9 | 18 |
| 265 | 161.46 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 9 |
| 270 | 161.48 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 16 |
| 274 | 161.48 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 318 | 161.58 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 566 | 162.19 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 583 | 162.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 2 |
| 589 | 162.24 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 20 | NA |
| 621 | 162.33 | temperature | 25 | 1440 | < th | dose dependent | rect. | 4 | 2 |
| 630 | 162.37 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 632 | 162.38 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 3 | 1 |
| 728 | 162.62 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 832 | 163.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 22 |
| 873 | 163.17 | atmosphere | 1015 | 43200 | > th | dose dependent | no | NA | NA |
| 895 | 163.27 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 18 | 23 |
| 950 | 163.47 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 993 | 163.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 23 |