Os03g0148700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium/calmodulin-regulated receptor-like kinase.
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Os03g0148700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium/calmodulin-regulated receptor-like kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.55 | 0.366 | 11.1 | 0.405 | 1.19 | 0.977 | 0.223 | 0.0806 | 0.244 | 20.3 | 20.6 | 3507 | -- | -- |
| 60.15 | 0.361 | 11.1 | 0.436 | 1.19 | 0.927 | 0.219 | -- | 0.238 | 20.2 | 21.1 | 3493 | -- | -- |
| 60.38 | 0.362 | 11.1 | 0.459 | 1.19 | 0.905 | -- | 0.138 | 0.26 | 20.2 | 21.1 | 3496 | -- | -- |
| 60.31 | 0.362 | 11.1 | 0.424 | 1.19 | 0.919 | -- | -- | 0.235 | 20.3 | 21.17 | 3493 | -- | -- |
| 122.56 | 0.516 | 11 | 0.669 | -- | 1.06 | -- | 0.424 | 0.229 | -- | 21.3 | 656 | -- | -- |
| 80.04 | 0.419 | 11 | 0.958 | 1.22 | -- | 0.281 | -- | 0.521 | 20.3 | -- | -- | -- | -- |
| 80.29 | 0.42 | 11 | 0.95 | 1.22 | -- | -- | -- | 0.521 | 20.3 | -- | -- | -- | -- |
| 109.39 | 0.487 | 11.1 | 0.649 | -- | 1.03 | -- | -- | 0.12 | -- | 25.1 | 610 | -- | -- |
| 63.34 | 0.371 | 11.1 | -- | 1.2 | 1.17 | -- | -- | 0.15 | 20.2 | 20.68 | 3847 | -- | -- |
| 163.08 | 0.597 | 11 | 0.942 | -- | -- | -- | -- | 0.508 | -- | -- | -- | -- | -- |
| 104.06 | 0.477 | 11 | -- | 1.22 | -- | -- | -- | 0.416 | 20.4 | -- | -- | -- | -- |
| 119.65 | 0.509 | 11.1 | -- | -- | 1.15 | -- | -- | 0.0248 | -- | 25.3 | 624 | -- | -- |
| 186.5 | 0.637 | 11 | -- | -- | -- | -- | -- | 0.404 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.47 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 8 |
| 3 | 59.04 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 10 |
| 15 | 59.52 | temperature | 25 | 720 | < th | dose dependent | sin | 12 | NA |
| 35 | 60.07 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 8 |
| 41 | 60.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 44 | 60.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 45 | 60.30 | temperature | 15 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 50 | 60.39 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 63 | 60.62 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 67 | 60.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 73 | 60.70 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 74 | 60.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 9 |
| 83 | 60.75 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 111 | 60.86 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 4 |
| 124 | 60.89 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 145 | 61.01 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 148 | 61.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 155 | 61.03 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 2 |
| 164 | 61.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 179 | 61.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 182 | 61.12 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 3 |
| 230 | 61.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 250 | 61.30 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 275 | 61.36 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 276 | 61.36 | temperature | 15 | 1440 | > th | dose dependent | rect. | 24 | 7 |
| 302 | 61.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 3 |
| 395 | 61.54 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 8 |
| 404 | 61.55 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 20 |
| 499 | 61.64 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 501 | 61.64 | temperature | 15 | 1440 | > th | dose dependent | rect. | 5 | 1 |
| 534 | 61.67 | temperature | 30 | 1440 | < th | dose dependent | rect. | 2 | 5 |
| 540 | 61.68 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 631 | 61.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 731 | 61.84 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |