Os03g0147700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : MT-A70 family protein.
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Os03g0147700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : MT-A70 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45.25 | 0.316 | 7.37 | 1.39 | 0.609 | 0.615 | 0.437 | 1.05 | 0.218 | 18.4 | 8.186 | 95 | -- | -- |
| 47.21 | 0.32 | 7.37 | 1.41 | 0.623 | 0.493 | 0.426 | -- | 0.222 | 17.9 | 7.699 | 94 | -- | -- |
| 45.71 | 0.315 | 7.37 | 1.38 | 0.617 | 0.589 | -- | 1.07 | 0.221 | 18.1 | 12.65 | 94 | -- | -- |
| 47.68 | 0.322 | 7.36 | 1.41 | 0.62 | 0.517 | -- | -- | 0.224 | 18.1 | 7.395 | 94 | -- | -- |
| 56.59 | 0.35 | 7.36 | 1.39 | -- | 0.76 | -- | 0.845 | 0.193 | -- | -0.5905 | 421 | -- | -- |
| 50.87 | 0.334 | 7.36 | 1.41 | 0.707 | -- | 0.537 | -- | 0.248 | 16.7 | -- | -- | -- | -- |
| 51.63 | 0.336 | 7.36 | 1.41 | 0.711 | -- | -- | -- | 0.25 | 16.8 | -- | -- | -- | -- |
| 57.29 | 0.353 | 7.36 | 1.36 | -- | 0.785 | -- | -- | 0.171 | -- | -1.537 | 502 | -- | -- |
| 99.72 | 0.468 | 7.39 | -- | 0.632 | 0.51 | -- | -- | 0.0985 | 18.1 | 7.395 | 94 | -- | -- |
| 78.37 | 0.414 | 7.35 | 1.38 | -- | -- | -- | -- | 0.232 | -- | -- | -- | -- | -- |
| 104 | 0.477 | 7.39 | -- | 0.685 | -- | -- | -- | 0.0935 | 16.8 | -- | -- | -- | -- |
| 105.59 | 0.479 | 7.4 | -- | -- | 0.811 | -- | -- | 0.0139 | -- | -19.58 | 575 | -- | -- |
| 128.82 | 0.53 | 7.38 | -- | -- | -- | -- | -- | 0.0786 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.67 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 3 | 38.79 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 6 |
| 8 | 38.92 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 26 | 39.44 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 34 | 39.58 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 166 | 41.23 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 3 |
| 186 | 41.39 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 200 | 41.44 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 5 |
| 255 | 41.83 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 272 | 41.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 274 | 41.98 | wind | 7.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 292 | 42.08 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 19 |
| 301 | 42.13 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 310 | 42.15 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 315 | 42.16 | temperature | 25.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 318 | 42.17 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 335 | 42.23 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 4 | 10 |
| 340 | 42.24 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 343 | 42.26 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 347 | 42.27 | temperature | 25.0 | 90 | > th | dose dependent | sin | 4 | NA |
| 351 | 42.27 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 21 | 17 |
| 366 | 42.31 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 24 | 14 |
| 393 | 42.42 | temperature | 25.0 | 10 | > th | dose dependent | sin | 2 | NA |
| 424 | 42.51 | atmosphere | 1000.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 485 | 42.63 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 499 | 42.66 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 14 |
| 513 | 42.69 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 524 | 42.71 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 540 | 42.76 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 6 |
| 548 | 42.79 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 8 |
| 570 | 42.84 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 585 | 42.86 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 597 | 42.88 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 618 | 42.93 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 628 | 42.95 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 4 | 14 |
| 661 | 43.02 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 662 | 43.02 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 669 | 43.05 | wind | 7.0 | 270 | < th | dose independent | rect. | 17 | 10 |
| 670 | 43.05 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 677 | 43.07 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 679 | 43.07 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 694 | 43.09 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 695 | 43.09 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 698 | 43.10 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 705 | 43.12 | radiation | 40.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 735 | 43.19 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 19 |
| 743 | 43.20 | wind | 9.0 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 757 | 43.22 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 761 | 43.22 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 771 | 43.24 | temperature | 25.0 | 270 | < th | dose independent | rect. | 2 | 9 |
| 822 | 43.33 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 843 | 43.36 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 845 | 43.36 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 846 | 43.36 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 849 | 43.36 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 850 | 43.36 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 851 | 43.36 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 864 | 43.37 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 872 | 43.37 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 889 | 43.39 | radiation | 10.0 | 270 | > th | dose independent | rect. | 16 | 21 |
| 908 | 43.41 | radiation | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 911 | 43.41 | radiation | 20.0 | 90 | < th | dose independent | rect. | 4 | 14 |
| 914 | 43.41 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 923 | 43.43 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 8 |
| 925 | 43.43 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 935 | 43.44 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 944 | 43.45 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 5 |
| 945 | 43.45 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 5 |
| 946 | 43.45 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 948 | 43.45 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 7 |
| 954 | 43.45 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 5 |
| 983 | 43.47 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 15 |
| 993 | 43.48 | radiation | 10.0 | 270 | < th | dose independent | rect. | 2 | 15 |