FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0146800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.79 (0.0688) R2 : 0.854
β1 : -5.45 (0.303) R2dD : 0.183 R2D : 0.337
β2 : 0.806 (0.166) R2dC : 0.00483 R2C : -0.0262
β3 : 4.74 (0.212) R2dE : 0.311 R2E : 0.625
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.05 (0.17) R2dN8 : 0.0875 R2N8 : 0.141
σ : 1.22
deviance : 685.52
__
_____
C
peak time of C : 3.87
E
wheather : temperature
threshold : 19.8
memory length : 11465
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 4.7
open length of G : 0.683

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
668.26 1.2 5.55 -5.11 0.643 3.74 1.13 -4.99 -1.81 4.45 20 4320 4 1
745.16 1.27 5.84 -5.32 0.666 4.35 0.97 -- -2.01 4.05 20.09 10077 4.65 0.714
671.03 1.21 5.56 -5.08 0.669 3.77 -- -4.95 -1.8 4 19.96 4349 3.99 0.878
685.52 1.22 5.79 -5.45 0.806 4.74 -- -- -2.05 3.87 19.8 11465 4.7 0.683
692.06 1.23 5.57 -5.02 -- 3.89 -- -5.1 -1.79 -- 19.94 4324 3.89 0.7
1438.37 1.78 6.23 -9.76 0.465 -- 1.88 -- -4.12 5.56 -- -- -- --
1443.98 1.78 6.24 -9.76 0.521 -- -- -- -4.13 3.87 -- -- -- --
702.21 1.23 5.77 -5.45 -- 4.78 -- -- -1.91 -- 19.8 11563 4.8 0.433
1176.05 1.6 5.73 -- 0.794 5.14 -- -- -1.95 3.68 19.56 25985 4.19 0.72
1458.89 1.78 6.24 -9.74 -- -- -- -- -4.12 -- -- -- -- --
3955.8 2.94 6 -- 0.332 -- -- -- -3.04 4.23 -- -- -- --
722.72 1.25 5.46 -- -- 8.15 -- -- -0.647 -- 19 28775 2.5 2.12
3961.77 2.94 6 -- -- -- -- -- -3.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 639.19 radiation 30 43200 < th dose independent rect. 16 1
2 639.63 radiation 30 43200 < th dose independent rect. 16 15
4 640.59 radiation 30 43200 < th dose independent rect. 16 7
7 640.69 radiation 30 43200 < th dose independent rect. 16 5
10 641.44 radiation 30 43200 < th dose independent rect. 16 10
16 643.89 radiation 10 43200 < th dose independent rect. 5 1
17 646.51 radiation 10 43200 < th dose independent rect. 24 6
19 646.56 radiation 40 43200 < th dose independent rect. 15 17
39 647.59 radiation 30 43200 > th dose dependent rect. 16 16
42 647.83 radiation 10 43200 < th dose independent rect. 17 2
49 648.02 radiation 10 43200 < th dose independent rect. 17 9
56 649.32 radiation 10 43200 < th dose independent rect. 17 14
60 651.48 radiation 1 43200 > th dose dependent rect. 18 12
63 655.51 radiation 30 43200 > th dose dependent rect. 7 1
91 657.55 temperature 20 14400 < th dose independent rect. 4 1
107 658.19 temperature 20 14400 > th dose independent rect. 4 1
120 659.94 radiation 1 43200 < th dose dependent rect. 7 4
122 660.40 radiation 1 43200 > th dose dependent rect. 4 2
133 660.56 radiation 40 43200 < th dose independent rect. 6 2
140 661.55 radiation 40 43200 < th dose independent rect. 24 8
141 661.60 radiation 1 43200 < th dose dependent rect. 7 2
149 662.18 radiation 1 43200 > th dose independent rect. 10 1
161 662.52 radiation 1 43200 < th dose independent rect. 10 1
162 662.52 radiation 1 43200 < th dose dependent rect. 10 1
169 663.69 radiation 10 43200 < th dose dependent rect. 4 2
170 663.71 radiation 10 43200 < th dose dependent rect. 1 5
178 664.19 wind 1 43200 < th dose dependent rect. 19 10
205 666.82 wind 1 43200 < th dose dependent rect. 20 8
237 668.65 temperature 20 43200 > th dose independent rect. 14 1
243 669.53 radiation 10 43200 < th dose dependent rect. 18 13
246 670.10 radiation 1 43200 > th dose independent rect. 7 4
247 670.20 radiation 1 43200 < th dose independent rect. 7 4
250 670.49 temperature 20 43200 < th dose independent rect. 14 1
254 671.39 humidity 70 43200 < th dose independent rect. 7 1
292 674.38 humidity 70 43200 > th dose independent rect. 7 1
314 676.58 radiation 1 43200 > th dose dependent rect. 18 1
353 679.18 temperature 25 14400 > th dose independent rect. 10 1
364 679.34 temperature 20 14400 > th dose dependent rect. 5 1
381 680.47 radiation 30 43200 > th dose independent rect. 7 1
398 680.52 temperature 20 14400 > th dose dependent rect. 2 1
439 683.07 temperature 25 14400 < th dose independent rect. 10 1
442 683.34 temperature 20 14400 > th dose dependent rect. 2 4
471 684.59 temperature 20 14400 > th dose dependent rect. 24 6
483 685.36 temperature 25 14400 > th dose independent rect. 8 3
487 685.48 radiation 10 43200 < th dose independent sin 13 NA
508 687.45 humidity 70 43200 < th dose independent rect. 6 3
514 687.73 temperature 25 14400 < th dose independent rect. 8 3
522 688.09 temperature 20 14400 < th dose dependent rect. 23 2
540 689.64 radiation 30 43200 < th dose dependent rect. 17 14
562 690.64 temperature 20 14400 < th dose dependent rect. 22 5
684 695.50 humidity 90 43200 > th dose dependent rect. 24 2
707 696.58 humidity 90 43200 > th dose dependent rect. 23 9
752 697.98 temperature 20 14400 < th dose dependent rect. 2 1
852 703.41 wind 1 43200 < th dose independent rect. 19 9
859 703.58 radiation 40 43200 < th dose independent sin 13 NA
925 705.59 humidity 90 43200 > th dose dependent rect. 13 17
949 706.28 humidity 90 43200 > th dose dependent sin 10 NA