Os03g0146600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os03g0146600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 83.91 | 0.43 | 8.44 | 0.393 | 1.26 | 1.19 | -1.12 | 0.259 | 0.548 | 1.51 | 21.4 | 959 | -- | -- |
| 84.09 | 0.427 | 8.45 | 0.328 | 1.26 | 1.19 | -1.06 | -- | 0.531 | 1.51 | 21.4 | 959 | -- | -- |
| 88.59 | 0.438 | 8.45 | 0.33 | 1.26 | 1.18 | -- | -0.117 | 0.529 | 1.53 | 21.39 | 960 | -- | -- |
| 88.62 | 0.438 | 8.45 | 0.359 | 1.26 | 1.19 | -- | -- | 0.534 | 1.53 | 21.3 | 960 | -- | -- |
| 182.35 | 0.629 | 8.44 | 0.296 | -- | 1.48 | -- | -0.0276 | 0.498 | -- | 21.3 | 949 | -- | -- |
| 128.77 | 0.532 | 8.38 | 0.774 | 1.42 | -- | -1.2 | -- | 0.858 | 1.25 | -- | -- | -- | -- |
| 134.71 | 0.544 | 8.38 | 0.816 | 1.42 | -- | -- | -- | 0.865 | 1.24 | -- | -- | -- | -- |
| 182.33 | 0.629 | 8.45 | 0.291 | -- | 1.5 | -- | -- | 0.477 | -- | 21.33 | 950 | -- | -- |
| 91.59 | 0.446 | 8.46 | -- | 1.25 | 1.3 | -- | -- | 0.471 | 1.55 | 21.38 | 970 | -- | -- |
| 258.83 | 0.752 | 8.35 | 0.871 | -- | -- | -- | -- | 0.894 | -- | -- | -- | -- | -- |
| 152.26 | 0.577 | 8.4 | -- | 1.43 | -- | -- | -- | 0.774 | 1.26 | -- | -- | -- | -- |
| 184.31 | 0.632 | 8.46 | -- | -- | 1.58 | -- | -- | 0.426 | -- | 21.39 | 960 | -- | -- |
| 278.84 | 0.779 | 8.38 | -- | -- | -- | -- | -- | 0.797 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 83.96 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 3 | 84.46 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 16 |
| 30 | 85.40 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 76 | 86.40 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 87 | 86.61 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 89 | 86.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 132 | 87.43 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 136 | 87.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 139 | 87.51 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 145 | 87.57 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 147 | 87.62 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 185 | 87.97 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 203 | 88.11 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 205 | 88.15 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 229 | 88.43 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 12 |
| 232 | 88.45 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 5 |
| 237 | 88.48 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 239 | 88.51 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 328 | 89.25 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 15 |
| 412 | 90.00 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 534 | 91.01 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 554 | 91.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 609 | 91.54 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 23 |
| 785 | 92.98 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 837 | 93.32 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 974 | 94.00 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 990 | 94.09 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 991 | 94.09 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |