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Os03g0146300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cyclin-dependent kinases regulatory subunit.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.3 (0.0235) R2 : 0.848
β1 : -1.56 (0.0871) R2dD : 0.113 R2D : 0.0159
β2 : -- (--) R2dC : -- R2C : --
β3 : 4.94 (0.1) R2dE : 0.843 R2E : 0.738
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.201 (0.0507) R2dN8 : 0.00617 R2N8 : -0.0228
σ : 0.439
deviance : 88.7
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C
peak time of C : --
E
wheather : temperature
threshold : -0.2806
memory length : 935
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 22.9
open length of G : 17.1

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
71.48 0.397 10.4 -1.81 1.88 3.22 -1.23 -2.69 -0.311 17.4 18.89 391 20.7 19.2
75.82 0.406 10.4 -1.43 1.89 3.18 -1.62 -- -0.203 17.3 18.06 401 20.6 19.4
73.76 0.4 10.4 -1.95 1.77 3.21 -- -3.56 -0.355 17.2 19.87 408 21 18.9
82.46 0.423 10.4 -1.41 1.98 3.16 -- -- -0.193 17.3 17.48 419 20.4 19.4
86.15 0.432 10.3 -2.08 -- 4.97 -- -3.1 -0.313 -- -0.3825 932 22.9 17.2
211.39 0.682 10.2 -0.727 2.53 -- -1.04 -- 0.288 16.3 -- -- -- --
214.38 0.686 10.2 -0.736 2.52 -- -- -- 0.282 16.3 -- -- -- --
88.7 0.439 10.3 -1.56 -- 4.94 -- -- -0.201 -- -0.2806 935 22.9 17.1
128.81 0.529 10.3 -- 2.01 2.43 -- -- 0.0025 17 19.87 398 20.6 19
557.94 1.1 10.2 -0.837 -- -- -- -- 0.215 -- -- -- -- --
228.66 0.707 10.2 -- 2.54 -- -- -- 0.364 16.3 -- -- -- --
140.3 0.552 10.3 -- -- 4.3 -- -- 0.0761 -- -10.47 996 23.3 15.9
576.41 1.12 10.2 -- -- -- -- -- 0.308 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 78.14 temperature 20 270 > th dose dependent rect. 21 20
40 89.33 temperature 20 270 > th dose dependent rect. 10 23
69 92.82 temperature 10 270 > th dose dependent rect. 9 23
93 94.44 temperature 20 270 > th dose dependent no NA NA
103 95.09 temperature 30 270 < th dose dependent rect. 5 16
118 96.07 temperature 30 270 < th dose dependent rect. 24 23
124 96.39 temperature 20 270 > th dose dependent sin 0 NA
181 99.30 temperature 30 720 < th dose dependent rect. 24 20
185 99.43 temperature 30 720 < th dose dependent rect. 17 19
206 99.98 temperature 20 10 > th dose dependent rect. 1 19
217 100.44 temperature 20 720 > th dose dependent sin 7 NA
234 100.93 temperature 30 270 < th dose dependent sin 23 NA
257 101.59 temperature 10 720 > th dose dependent rect. 12 21
308 102.96 temperature 20 1440 > th dose dependent rect. 15 13
316 103.05 temperature 20 1440 > th dose dependent rect. 14 17
318 103.06 temperature 20 1440 > th dose dependent sin 15 NA
370 103.62 temperature 30 270 < th dose dependent rect. 4 23
398 103.87 temperature 30 270 < th dose dependent rect. 3 19
423 104.12 temperature 30 270 < th dose dependent no NA NA
438 104.26 temperature 20 1440 > th dose dependent rect. 17 5
510 104.91 temperature 10 720 > th dose dependent rect. 19 14
531 105.02 temperature 20 1440 > th dose dependent no NA NA
548 105.14 temperature 20 1440 > th dose dependent rect. 23 23
623 105.47 temperature 30 1440 < th dose dependent rect. 15 17
634 105.52 temperature 10 720 > th dose dependent rect. 2 22
768 106.05 temperature 20 1440 > th dose dependent rect. 18 1
818 106.25 temperature 30 1440 < th dose dependent sin 13 NA
855 106.37 temperature 20 1440 > th dose dependent rect. 20 1
890 106.50 temperature 30 720 < th dose dependent sin 7 NA