FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0146200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Tonoplast intrinsic protein (Tonoplast water channel).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.81 (0.0227) R2 : 0.00103
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0328 (0.0478) R2dN8 : 0.00133 R2N8 : 0.00103
σ : 0.427
deviance : 83.83
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
81.23 0.42 3.41 1.28 0.0723 -70.3 0.129 -146 0.0401 18.3 15 90 -- --
81.3 0.423 2.81 0.027 0.0725 -1.06 0.127 -- 0.0425 18.3 15.27 2 -- --
81.25 0.42 3.41 1.28 0.0754 -70.3 -- -146 0.0409 17.4 15.01 91 -- --
81.32 0.423 2.81 0.0261 0.0749 -1.07 -- -- 0.0432 17.5 15.23 2 -- --
81.55 0.421 3.41 1.28 -- -70.3 -- -146 0.039 -- 15.01 91 -- --
83.5 0.428 2.81 -0.0134 0.0746 -- 0.106 -- 0.0322 18.5 -- -- -- --
83.53 0.428 2.81 -0.0148 0.075 -- -- -- 0.0325 18.5 -- -- -- --
81.62 0.423 2.81 0.0235 -- -1.06 -- -- 0.0414 -- 15.17 2 -- --
81.34 0.422 2.81 -- 0.0745 -1.06 -- -- 0.0403 17.6 15.2 3 -- --
83.83 0.428 2.81 -0.0167 -- -- -- -- 0.031 -- -- -- -- --
83.54 0.428 2.81 -- 0.0752 -- -- -- 0.0342 18.5 -- -- -- --
81.63 0.422 2.81 -- -- -1.05 -- -- 0.0387 -- 15.17 2 -- --
83.83 0.427 2.81 -- -- -- -- -- 0.0328 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 76.08 radiation 10.0 1440 < th dose dependent rect. 21 1
8 76.14 temperature 10.0 1440 > th dose independent rect. 21 1
11 76.14 temperature 30.0 1440 < th dose independent rect. 21 1
15 76.14 humidity 50.0 1440 > th dose independent rect. 21 1
21 76.14 atmosphere 995.0 1440 > th dose independent rect. 21 1
22 76.14 radiation 1.0 1440 < th dose independent rect. 21 1
42 76.14 temperature 10.0 1440 > th dose independent rect. 22 23
50 76.25 temperature 25.0 30 > th dose independent rect. 20 1
52 76.40 atmosphere 1005.0 30 > th dose dependent rect. 20 1
53 76.45 temperature 20.0 30 > th dose dependent rect. 20 1
55 76.50 humidity 80.0 30 > th dose independent rect. 20 1
57 76.53 humidity 90.0 30 < th dose independent rect. 20 1
59 76.57 wind 3.0 30 > th dose independent rect. 20 1
60 76.57 wind 7.0 30 < th dose independent rect. 20 1
64 76.60 atmosphere 1005.0 30 > th dose independent rect. 20 1
72 76.71 temperature 10.0 30 > th dose independent rect. 20 1
74 76.71 temperature 30.0 30 < th dose independent rect. 20 1
75 76.71 humidity 50.0 30 > th dose independent rect. 20 1
79 76.71 atmosphere 1010.0 30 < th dose independent rect. 20 1
81 76.71 radiation 1.0 30 < th dose independent rect. 20 1
86 76.71 precipitation 0.1 30 < th dose independent rect. 20 1
87 76.71 temperature 10.0 30 > th dose independent rect. 21 23
88 76.71 radiation 1.0 30 < th dose dependent rect. 20 1
93 76.71 precipitation 0.1 30 < th dose dependent rect. 20 1
94 76.72 humidity 60.0 30 < th dose independent rect. 18 1
109 76.73 wind 9.0 30 < th dose dependent rect. 20 1
110 76.74 humidity 50.0 30 > th dose dependent rect. 20 1
113 76.81 wind 1.0 30 > th dose dependent rect. 20 1
118 77.02 humidity 90.0 30 < th dose dependent rect. 20 1
120 77.14 temperature 30.0 30 > th dose dependent rect. 18 1
135 77.16 atmosphere 1015.0 30 < th dose dependent rect. 20 1
137 77.28 radiation 1.0 30 > th dose independent rect. 18 1
148 77.35 humidity 60.0 30 < th dose dependent rect. 18 1
165 77.48 wind 9.0 30 < th dose independent rect. 21 23
167 77.56 temperature 30.0 30 < th dose dependent rect. 20 1
168 77.69 wind 9.0 1440 < th dose independent rect. 21 1
178 77.93 temperature 30.0 10 > th dose independent rect. 18 1
215 78.13 radiation 1.0 30 > th dose dependent rect. 18 1
296 78.98 wind 1.0 90 < th dose dependent rect. 21 1
297 79.00 wind 1.0 10 < th dose independent rect. 21 1
301 79.00 wind 1.0 10 < th dose dependent rect. 21 1
321 79.09 wind 1.0 90 < th dose independent rect. 21 1
336 79.15 atmosphere 1010.0 10 < th dose dependent rect. 18 1
337 79.16 wind 1.0 90 < th dose independent rect. 16 6
366 79.27 wind 3.0 10 > th dose independent rect. 18 1
369 79.31 wind 1.0 10 > th dose dependent rect. 18 1
390 79.47 wind 5.0 10 < th dose independent rect. 18 1
396 79.55 atmosphere 1000.0 10 > th dose independent rect. 18 1
415 79.58 temperature 10.0 10 > th dose independent rect. 18 1
418 79.58 humidity 50.0 10 > th dose independent rect. 18 1
419 79.58 atmosphere 1010.0 10 < th dose independent rect. 18 1
421 79.58 radiation 20.0 10 < th dose independent rect. 18 1
424 79.58 precipitation 0.1 10 < th dose independent rect. 18 1
425 79.58 temperature 10.0 10 > th dose independent rect. 19 23
426 79.58 precipitation 0.1 10 < th dose dependent rect. 18 1
429 79.61 wind 9.0 10 < th dose independent rect. 18 1
434 79.66 radiation 40.0 10 < th dose dependent rect. 18 1
441 79.75 temperature 15.0 30 > th dose independent rect. 7 23
455 79.91 wind 9.0 10 < th dose dependent rect. 18 1
456 79.91 atmosphere 995.0 10 > th dose dependent rect. 18 1
457 79.95 temperature 15.0 1440 > th dose independent rect. 18 5
481 80.01 temperature 30.0 30 > th dose independent sin 11 NA
487 80.04 wind 9.0 10 < th dose independent rect. 19 23
561 80.21 temperature 30.0 30 < th dose independent sin 11 NA
568 80.26 humidity 60.0 30 > th dose independent sin 11 NA
578 80.29 temperature 15.0 30 > th dose independent rect. 21 9
613 80.43 temperature 15.0 1440 > th dose independent rect. 14 9
654 80.47 temperature 15.0 1440 > th dose independent rect. 9 9
655 80.47 temperature 30.0 30 < th dose independent rect. 7 23
656 80.48 temperature 15.0 1440 > th dose independent rect. 18 1
668 80.52 temperature 15.0 1440 > th dose independent rect. 11 7
682 80.53 wind 9.0 90 > th dose independent rect. 13 2
687 80.53 wind 9.0 90 > th dose dependent rect. 13 2
689 80.54 wind 9.0 10 > th dose independent rect. 13 1
705 80.54 wind 9.0 10 > th dose dependent rect. 13 1
719 80.55 atmosphere 1015.0 1440 < th dose independent rect. 24 7
721 80.56 temperature 15.0 1440 > th dose independent rect. 11 10
736 80.57 humidity 50.0 90 < th dose independent rect. 17 19
773 80.59 temperature 15.0 10 > th dose independent rect. 21 21
779 80.60 radiation 1.0 90 > th dose dependent rect. 17 14
780 80.61 temperature 15.0 1440 > th dose independent rect. 9 12
803 80.64 humidity 50.0 90 < th dose dependent rect. 17 19
841 80.74 temperature 15.0 270 > th dose independent rect. 19 8
853 80.76 atmosphere 1015.0 1440 < th dose independent rect. 24 4
856 80.76 temperature 30.0 30 < th dose independent rect. 21 23
860 80.76 atmosphere 1000.0 10 > th dose dependent rect. 18 4
920 80.86 atmosphere 1005.0 10 > th dose independent rect. 18 4
921 80.86 wind 1.0 10 > th dose independent rect. 19 23
942 80.88 temperature 15.0 270 > th dose independent rect. 18 23
954 80.90 wind 7.0 10 > th dose independent rect. 19 1
974 80.90 wind 7.0 10 > th dose dependent rect. 19 1
1000 80.91 radiation 1.0 90 < th dose dependent rect. 21 22