Os03g0146000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RAB1X.
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Os03g0146000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RAB1X.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.15 | 0.352 | 12 | -0.524 | 0.805 | 0.91 | 0.105 | 2.21 | 0.0432 | 7.52 | 29.85 | 257 | -- | -- |
| 61.29 | 0.365 | 12 | -0.144 | 0.837 | 0.905 | 0.481 | -- | 0.124 | 7.38 | 30.84 | 235 | -- | -- |
| 56.17 | 0.349 | 12 | -0.525 | 0.807 | 0.914 | -- | 2.24 | 0.0414 | 7.56 | 29.9 | 249 | -- | -- |
| 61.7 | 0.366 | 12 | -0.135 | 0.817 | 0.908 | -- | -- | 0.126 | 7.47 | 31.2 | 236 | -- | -- |
| 84.71 | 0.429 | 12 | -0.407 | -- | 1.53 | -- | 2.53 | 0.0977 | -- | 61.97 | 376 | -- | -- |
| 70.64 | 0.394 | 12 | -0.371 | 1.03 | -- | 0.814 | -- | -0.0322 | 6.59 | -- | -- | -- | -- |
| 72.23 | 0.398 | 12 | -0.357 | 1.03 | -- | -- | -- | -0.034 | 6.72 | -- | -- | -- | -- |
| 89.08 | 0.44 | 12 | 0.00118 | -- | 1.6 | -- | -- | 0.209 | -- | 47.88 | 389 | -- | -- |
| 62.12 | 0.367 | 12 | -- | 0.816 | 0.971 | -- | -- | 0.156 | 7.59 | 30.98 | 235 | -- | -- |
| 127.57 | 0.528 | 12 | -0.334 | -- | -- | -- | -- | -0.0137 | -- | -- | -- | -- | -- |
| 75.59 | 0.407 | 12 | -- | 1.03 | -- | -- | -- | 0.00581 | 6.74 | -- | -- | -- | -- |
| 89.08 | 0.44 | 12 | -- | -- | 1.6 | -- | -- | 0.209 | -- | 50.29 | 389 | -- | -- |
| 130.51 | 0.533 | 12 | -- | -- | -- | -- | -- | 0.0234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.47 | temperature | 15 | 270 | > th | dose dependent | sin | 4 | NA |
| 8 | 48.32 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 14 | 48.97 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 15 | 49.00 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 22 | 49.32 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 15 |
| 32 | 49.53 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 33 | 49.57 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 15 |
| 39 | 49.64 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 11 |
| 40 | 49.67 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 10 |
| 116 | 50.90 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 403 | 53.12 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 406 | 53.13 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 12 |
| 412 | 53.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 482 | 53.49 | temperature | 25 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 817 | 54.77 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 825 | 54.82 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 13 |
| 862 | 54.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 876 | 54.97 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |