Os03g0145800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ankyrin repeat containing protein.
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Os03g0145800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ankyrin repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.82 | 0.315 | 11.3 | -0.497 | 0.824 | 0.462 | 0.454 | -0.291 | -0.134 | 15.3 | 20.5 | 1233 | -- | -- |
| 45.04 | 0.313 | 11.3 | -0.439 | 0.825 | 0.459 | 0.502 | -- | -0.116 | 15.3 | 20.6 | 1215 | -- | -- |
| 45.46 | 0.314 | 11.3 | -0.503 | 0.828 | 0.47 | -- | -0.352 | -0.136 | 15.3 | 20.55 | 1216 | -- | -- |
| 45.77 | 0.315 | 11.3 | -0.436 | 0.831 | 0.506 | -- | -- | -0.121 | 15.2 | 20.58 | 1216 | -- | -- |
| 76.75 | 0.41 | 11.3 | -0.38 | -- | 0.482 | -- | 0.0184 | -0.117 | -- | 20.55 | 1216 | -- | -- |
| 50.92 | 0.335 | 11.2 | -0.24 | 0.791 | -- | 0.589 | -- | -0.00976 | 15.4 | -- | -- | -- | -- |
| 52.02 | 0.338 | 11.2 | -0.229 | 0.793 | -- | -- | -- | -0.00637 | 15.3 | -- | -- | -- | -- |
| 76.76 | 0.41 | 11.3 | -0.383 | -- | 0.481 | -- | -- | -0.118 | -- | 20.55 | 1216 | -- | -- |
| 49.93 | 0.329 | 11.2 | -- | 0.826 | 0.338 | -- | -- | -0.0415 | 15.2 | 20.58 | 976 | -- | -- |
| 87.5 | 0.437 | 11.2 | -0.263 | -- | -- | -- | -- | -0.0273 | -- | -- | -- | -- | -- |
| 53.4 | 0.342 | 11.2 | -- | 0.798 | -- | -- | -- | 0.0192 | 15.3 | -- | -- | -- | -- |
| 80.45 | 0.419 | 11.2 | -- | -- | 0.429 | -- | -- | -0.0675 | -- | 20.58 | 976 | -- | -- |
| 89.32 | 0.441 | 11.2 | -- | -- | -- | -- | -- | 0.00186 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 2 | 43.43 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 3 | 43.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 4 | 43.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 3 |
| 9 | 43.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 4 |
| 16 | 43.65 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 9 |
| 17 | 43.66 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 18 | 43.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 9 |
| 28 | 43.72 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 42 | 43.78 | atmosphere | 1005 | 270 | > th | dose independent | rect. | 15 | 15 |
| 65 | 43.87 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 72 | 43.90 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 77 | 43.90 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 79 | 43.91 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 1 |
| 83 | 43.92 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 86 | 43.92 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 113 | 44.00 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 116 | 44.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 138 | 44.07 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 13 |
| 151 | 44.12 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 173 | 44.16 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 176 | 44.18 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 184 | 44.20 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 211 | 44.25 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 228 | 44.29 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 237 | 44.31 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 266 | 44.36 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 301 | 44.43 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 312 | 44.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 7 |
| 356 | 44.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 363 | 44.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 403 | 44.55 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 410 | 44.55 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 5 |
| 427 | 44.57 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 435 | 44.57 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 14 | 18 |
| 451 | 44.59 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 455 | 44.60 | radiation | 20 | 4320 | < th | dose independent | rect. | 22 | 9 |
| 461 | 44.61 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 10 | 5 |
| 469 | 44.62 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 471 | 44.62 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 473 | 44.62 | radiation | 20 | 4320 | < th | dose independent | rect. | 24 | 7 |
| 483 | 44.63 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 484 | 44.63 | radiation | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 498 | 44.63 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 523 | 44.65 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 566 | 44.68 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 573 | 44.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 578 | 44.69 | humidity | 50 | 43200 | > th | dose independent | rect. | 22 | 11 |
| 583 | 44.69 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 594 | 44.70 | humidity | 50 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 614 | 44.71 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 9 |
| 615 | 44.72 | atmosphere | 995 | 43200 | < th | dose independent | sin | 23 | NA |
| 617 | 44.72 | radiation | 20 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 630 | 44.72 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 13 | 4 |
| 631 | 44.73 | atmosphere | 995 | 43200 | > th | dose independent | sin | 23 | NA |
| 681 | 44.75 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 9 | 13 |
| 701 | 44.76 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 707 | 44.76 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 23 |
| 771 | 44.79 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 780 | 44.80 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 7 |
| 811 | 44.82 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 838 | 44.84 | temperature | 20 | 4320 | < th | dose independent | sin | 16 | NA |
| 847 | 44.84 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 924 | 44.88 | atmosphere | 1005 | 30 | > th | dose independent | rect. | 18 | 14 |
| 979 | 44.91 | humidity | 50 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 990 | 44.93 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |