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Os03g0145000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
243.5 | 0.733 | 4.37 | 0.367 | 0.418 | -2.12 | 0.138 | -0.752 | -0.162 | 12.5 | 15.1 | 37 | 3.02 | 23.2 |
243.66 | 0.727 | 4.37 | 0.365 | 0.416 | -1.99 | 0.13 | -- | -0.153 | 12.5 | 15.19 | 37 | 3.06 | 23.1 |
243.57 | 0.727 | 4.37 | 0.377 | 0.416 | -2.12 | -- | -0.762 | -0.161 | 12.5 | 15.13 | 38 | 3.03 | 23.2 |
243.49 | 0.727 | 4.37 | 0.399 | 0.412 | -1.99 | -- | -- | -0.146 | 12.5 | 15.1 | 44 | 3.05 | 22.9 |
253.99 | 0.742 | 4.37 | 0.37 | -- | -1.9 | -- | -0.662 | -0.152 | -- | 15.28 | 19 | 3.02 | 23.4 |
280.11 | 0.785 | 4.34 | 0.243 | 0.305 | -- | 0.354 | -- | -0.0326 | 11.6 | -- | -- | -- | -- |
280.64 | 0.785 | 4.34 | 0.257 | 0.304 | -- | -- | -- | -0.0315 | 11.4 | -- | -- | -- | -- |
254.18 | 0.743 | 4.37 | 0.364 | -- | -1.8 | -- | -- | -0.143 | -- | 15.21 | 18 | 3.09 | 23.6 |
246.96 | 0.732 | 4.37 | -- | 0.435 | -1.94 | -- | -- | -0.172 | 12.5 | 15.07 | 39 | 3.06 | 22.9 |
286.44 | 0.791 | 4.34 | 0.249 | -- | -- | -- | -- | -0.0346 | -- | -- | -- | -- | -- |
282.38 | 0.786 | 4.34 | -- | 0.301 | -- | -- | -- | -0.06 | 11.4 | -- | -- | -- | -- |
257.62 | 0.748 | 4.38 | -- | -- | -1.74 | -- | -- | -0.18 | -- | 15.23 | 18 | 3.26 | 23 |
288.07 | 0.792 | 4.35 | -- | -- | -- | -- | -- | -0.0622 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance![]() |
Histogram![]() ![]() |
Local optima within top1000 grid-points
rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
---|---|---|---|---|---|---|---|---|---|
1 | 244.41 | temperature | 15.0 | 30 | > th | dose independent | rect. | 3 | 23 |
3 | 245.11 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
5 | 247.10 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 3 | 1 |
6 | 247.16 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 2 | 1 |
8 | 247.41 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |
9 | 247.64 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 23 |
10 | 247.64 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 23 |
11 | 247.65 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
14 | 247.82 | wind | 5.0 | 10 | < th | dose independent | rect. | 2 | 1 |
16 | 247.84 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 2 | 1 |
21 | 247.92 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 2 | 1 |
25 | 247.96 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
27 | 247.96 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
28 | 247.96 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
32 | 247.96 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
34 | 247.96 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
39 | 247.96 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
41 | 247.96 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
46 | 247.96 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
67 | 247.99 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
69 | 247.99 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
77 | 248.01 | wind | 9.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
99 | 248.19 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
123 | 249.07 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 23 |
143 | 249.93 | wind | 9.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
144 | 249.93 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
147 | 249.93 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
151 | 249.93 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
160 | 249.93 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 3 | 1 |
161 | 249.93 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
181 | 249.93 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 23 |
198 | 250.12 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 4 | 22 |
246 | 252.78 | humidity | 90.0 | 90 | < th | dose independent | rect. | 2 | 1 |
253 | 253.51 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 23 |
378 | 259.54 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 8 | 1 |
381 | 259.73 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 12 |
390 | 260.12 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 8 | 3 |
392 | 260.16 | atmosphere | 1000.0 | 1440 | > th | dose independent | rect. | 3 | 9 |
393 | 260.18 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 3 | 23 |
397 | 260.27 | atmosphere | 1000.0 | 1440 | < th | dose independent | rect. | 7 | 3 |
466 | 260.70 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 4 |
469 | 260.74 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 7 | 4 |
474 | 260.78 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 5 | 7 |
499 | 261.03 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 9 | 1 |
534 | 261.41 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 4 | 22 |
564 | 261.83 | radiation | 10.0 | 10 | < th | dose independent | rect. | 4 | 22 |
584 | 262.04 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 2 |
586 | 262.07 | atmosphere | 1000.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
646 | 262.77 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 15 | 13 |
653 | 262.84 | temperature | 25.0 | 10 | > th | dose independent | rect. | 23 | 8 |
661 | 262.96 | humidity | 50.0 | 720 | > th | dose independent | rect. | 15 | 12 |
703 | 263.46 | atmosphere | 1000.0 | 1440 | < th | dose independent | sin | 7 | NA |
711 | 263.50 | wind | 1.0 | 90 | > th | dose independent | rect. | 3 | 22 |
764 | 263.69 | atmosphere | 1000.0 | 1440 | > th | dose independent | sin | 7 | NA |
785 | 263.96 | temperature | 25.0 | 10 | > th | dose independent | rect. | 23 | 10 |
790 | 264.01 | humidity | 60.0 | 10 | > th | dose dependent | rect. | 18 | 10 |
805 | 264.14 | wind | 9.0 | 30 | < th | dose dependent | rect. | 15 | 13 |
814 | 264.31 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 2 |
826 | 264.41 | humidity | 50.0 | 720 | > th | dose independent | rect. | 15 | 4 |
829 | 264.43 | humidity | 90.0 | 10 | > th | dose independent | rect. | 8 | 20 |
830 | 264.45 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 4 | 11 |
831 | 264.45 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 3 | 23 |
834 | 264.47 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 15 | 13 |
840 | 264.51 | humidity | 50.0 | 720 | > th | dose independent | rect. | 15 | 2 |
841 | 264.51 | temperature | 30.0 | 10 | < th | dose independent | rect. | 15 | 13 |
844 | 264.53 | humidity | 50.0 | 720 | > th | dose independent | rect. | 7 | 20 |
845 | 264.54 | temperature | 25.0 | 10 | < th | dose independent | rect. | 24 | 4 |
854 | 264.69 | precipitation | 0.1 | 720 | < th | dose independent | rect. | 23 | 16 |
855 | 264.69 | precipitation | 0.1 | 720 | < th | dose dependent | rect. | 23 | 16 |
856 | 264.70 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 3 | 1 |
862 | 264.77 | humidity | 90.0 | 10 | > th | dose independent | rect. | 11 | 17 |
882 | 264.88 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 23 |
896 | 265.00 | temperature | 25.0 | 10 | > th | dose independent | sin | 7 | NA |
902 | 265.03 | temperature | 25.0 | 10 | > th | dose independent | rect. | 23 | 22 |
914 | 265.10 | temperature | 15.0 | 720 | > th | dose independent | rect. | 11 | 16 |
924 | 265.15 | humidity | 90.0 | 10 | > th | dose independent | rect. | 18 | 10 |
925 | 265.16 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 8 |
963 | 265.37 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 20 |
973 | 265.40 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 12 |
977 | 265.44 | humidity | 70.0 | 10 | > th | dose independent | rect. | 18 | 10 |
978 | 265.44 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 4 |
988 | 265.50 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 4 | 5 |