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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0145000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.38 (0.0399) R2 : 0.107
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.74 (0.237) R2dE : 0.109 R2E : 0.095
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.18 (0.0853) R2dN8 : 0.0116 R2N8 : -0.00277
σ : 0.748
deviance : 257.62
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 15.23
memory length : 18
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.26
open length of G : 23

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
243.5 0.733 4.37 0.367 0.418 -2.12 0.138 -0.752 -0.162 12.5 15.1 37 3.02 23.2
243.66 0.727 4.37 0.365 0.416 -1.99 0.13 -- -0.153 12.5 15.19 37 3.06 23.1
243.57 0.727 4.37 0.377 0.416 -2.12 -- -0.762 -0.161 12.5 15.13 38 3.03 23.2
243.49 0.727 4.37 0.399 0.412 -1.99 -- -- -0.146 12.5 15.1 44 3.05 22.9
253.99 0.742 4.37 0.37 -- -1.9 -- -0.662 -0.152 -- 15.28 19 3.02 23.4
280.11 0.785 4.34 0.243 0.305 -- 0.354 -- -0.0326 11.6 -- -- -- --
280.64 0.785 4.34 0.257 0.304 -- -- -- -0.0315 11.4 -- -- -- --
254.18 0.743 4.37 0.364 -- -1.8 -- -- -0.143 -- 15.21 18 3.09 23.6
246.96 0.732 4.37 -- 0.435 -1.94 -- -- -0.172 12.5 15.07 39 3.06 22.9
286.44 0.791 4.34 0.249 -- -- -- -- -0.0346 -- -- -- -- --
282.38 0.786 4.34 -- 0.301 -- -- -- -0.06 11.4 -- -- -- --
257.62 0.748 4.38 -- -- -1.74 -- -- -0.18 -- 15.23 18 3.26 23
288.07 0.792 4.35 -- -- -- -- -- -0.0622 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 244.41 temperature 15.0 30 > th dose independent rect. 3 23
3 245.11 atmosphere 1005.0 90 > th dose dependent rect. 2 1
5 247.10 radiation 1.0 14400 < th dose dependent rect. 3 1
6 247.16 temperature 15.0 90 > th dose dependent rect. 2 1
8 247.41 wind 1.0 30 > th dose independent rect. 2 1
9 247.64 precipitation 0.1 30 < th dose independent rect. 3 23
10 247.64 precipitation 0.1 30 < th dose dependent rect. 3 23
11 247.65 temperature 30.0 30 < th dose dependent rect. 2 1
14 247.82 wind 5.0 10 < th dose independent rect. 2 1
16 247.84 atmosphere 995.0 10 > th dose dependent rect. 2 1
21 247.92 atmosphere 1000.0 10 > th dose independent rect. 2 1
25 247.96 temperature 10.0 30 > th dose independent rect. 2 1
27 247.96 temperature 30.0 30 < th dose independent rect. 2 1
28 247.96 humidity 50.0 30 > th dose independent rect. 2 1
32 247.96 atmosphere 1010.0 30 < th dose independent rect. 2 1
34 247.96 radiation 1.0 30 < th dose independent rect. 2 1
39 247.96 precipitation 0.1 30 < th dose independent rect. 2 1
41 247.96 radiation 1.0 30 < th dose dependent rect. 2 1
46 247.96 precipitation 0.1 30 < th dose dependent rect. 2 1
67 247.99 humidity 50.0 30 > th dose dependent rect. 2 1
69 247.99 atmosphere 1015.0 30 < th dose dependent rect. 2 1
77 248.01 wind 9.0 30 < th dose dependent rect. 2 1
99 248.19 wind 9.0 30 < th dose independent rect. 3 23
123 249.07 atmosphere 995.0 30 > th dose independent rect. 3 23
143 249.93 wind 9.0 1440 < th dose independent rect. 3 1
144 249.93 temperature 10.0 1440 > th dose independent rect. 3 1
147 249.93 temperature 30.0 1440 < th dose independent rect. 3 1
151 249.93 humidity 50.0 1440 > th dose independent rect. 3 1
160 249.93 atmosphere 995.0 1440 > th dose independent rect. 3 1
161 249.93 radiation 1.0 1440 < th dose independent rect. 3 1
181 249.93 temperature 10.0 1440 > th dose independent rect. 4 23
198 250.12 temperature 10.0 10 > th dose dependent rect. 4 22
246 252.78 humidity 90.0 90 < th dose independent rect. 2 1
253 253.51 humidity 50.0 30 > th dose independent rect. 3 23
378 259.54 atmosphere 1000.0 1440 > th dose independent rect. 8 1
381 259.73 temperature 30.0 720 < th dose independent rect. 15 12
390 260.12 atmosphere 1000.0 1440 > th dose independent rect. 8 3
392 260.16 atmosphere 1000.0 1440 > th dose independent rect. 3 9
393 260.18 atmosphere 1015.0 30 < th dose independent rect. 3 23
397 260.27 atmosphere 1000.0 1440 < th dose independent rect. 7 3
466 260.70 temperature 30.0 720 < th dose independent rect. 15 4
469 260.74 atmosphere 1000.0 1440 < th dose dependent rect. 7 4
474 260.78 atmosphere 1000.0 1440 < th dose dependent rect. 5 7
499 261.03 atmosphere 1000.0 1440 < th dose dependent rect. 9 1
534 261.41 radiation 10.0 10 < th dose dependent rect. 4 22
564 261.83 radiation 10.0 10 < th dose independent rect. 4 22
584 262.04 temperature 30.0 720 < th dose independent rect. 15 2
586 262.07 atmosphere 1000.0 1440 < th dose dependent rect. 11 1
646 262.77 atmosphere 995.0 10 > th dose dependent rect. 15 13
653 262.84 temperature 25.0 10 > th dose independent rect. 23 8
661 262.96 humidity 50.0 720 > th dose independent rect. 15 12
703 263.46 atmosphere 1000.0 1440 < th dose independent sin 7 NA
711 263.50 wind 1.0 90 > th dose independent rect. 3 22
764 263.69 atmosphere 1000.0 1440 > th dose independent sin 7 NA
785 263.96 temperature 25.0 10 > th dose independent rect. 23 10
790 264.01 humidity 60.0 10 > th dose dependent rect. 18 10
805 264.14 wind 9.0 30 < th dose dependent rect. 15 13
814 264.31 temperature 10.0 720 > th dose dependent rect. 3 2
826 264.41 humidity 50.0 720 > th dose independent rect. 15 4
829 264.43 humidity 90.0 10 > th dose independent rect. 8 20
830 264.45 atmosphere 1000.0 10 > th dose independent rect. 4 11
831 264.45 radiation 40.0 30 < th dose dependent rect. 3 23
834 264.47 humidity 50.0 10 > th dose dependent rect. 15 13
840 264.51 humidity 50.0 720 > th dose independent rect. 15 2
841 264.51 temperature 30.0 10 < th dose independent rect. 15 13
844 264.53 humidity 50.0 720 > th dose independent rect. 7 20
845 264.54 temperature 25.0 10 < th dose independent rect. 24 4
854 264.69 precipitation 0.1 720 < th dose independent rect. 23 16
855 264.69 precipitation 0.1 720 < th dose dependent rect. 23 16
856 264.70 atmosphere 1015.0 1440 < th dose independent rect. 3 1
862 264.77 humidity 90.0 10 > th dose independent rect. 11 17
882 264.88 temperature 30.0 30 < th dose independent rect. 3 23
896 265.00 temperature 25.0 10 > th dose independent sin 7 NA
902 265.03 temperature 25.0 10 > th dose independent rect. 23 22
914 265.10 temperature 15.0 720 > th dose independent rect. 11 16
924 265.15 humidity 90.0 10 > th dose independent rect. 18 10
925 265.16 temperature 30.0 720 < th dose independent rect. 15 8
963 265.37 temperature 10.0 720 > th dose dependent rect. 19 20
973 265.40 humidity 50.0 90 > th dose dependent rect. 15 12
977 265.44 humidity 70.0 10 > th dose independent rect. 18 10
978 265.44 temperature 10.0 720 > th dose dependent rect. 3 4
988 265.50 atmosphere 1005.0 10 > th dose dependent rect. 4 5