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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0144300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Xyloglucan galactosyltransferase KATAMARI 1 (EC 2.4.1.-) (MURUS3 protein).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.17 (0.0157) R2 : 0.000144
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.00846 (0.0331) R2dN8 : 0.000186 R2N8 : 0.000144
σ : 0.296
deviance : 40.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
37.3 0.284 3.2 -0.293 0.166 -0.891 -0.0347 3.9 0.00399 8.46 1000 10 -- --
37.52 0.287 3.16 -0.0319 0.163 -0.202 -0.0534 -- 0.0037 8.35 1000 10 -- --
37.3 0.287 3.2 -0.296 0.165 -0.896 -- 3.94 0.00406 8.54 1000 10 -- --
37.53 0.287 3.16 -0.0333 0.162 -0.201 -- -- 0.00381 8.46 1000 13 -- --
38.81 0.29 3.21 -0.289 -- -0.902 -- 3.94 0.00466 -- 999.8 19 -- --
38.63 0.291 3.16 0.00385 0.163 -- -0.0381 -- -0.00966 8.49 -- -- -- --
38.64 0.291 3.16 0.0028 0.163 -- -- -- -0.00957 8.58 -- -- -- --
38.99 0.291 3.16 -0.0298 -- -0.206 -- -- 0.00544 -- 999.8 19 -- --
37.55 0.287 3.16 -- 0.162 -0.196 -- -- 0.00704 8.48 1000 12 -- --
40.13 0.296 3.17 0.00337 -- -- -- -- -0.00809 -- -- -- -- --
38.64 0.291 3.16 -- 0.163 -- -- -- -0.00988 8.58 -- -- -- --
39.02 0.291 3.16 -- -- -0.201 -- -- 0.00858 -- 999.8 19 -- --
40.13 0.296 3.17 -- -- -- -- -- -0.00846 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 34.16 humidity 90.0 10 < th dose independent rect. 4 1
3 34.66 wind 1.0 30 > th dose independent rect. 4 1
4 34.84 temperature 25.0 10 > th dose independent rect. 4 1
7 34.86 temperature 25.0 90 > th dose dependent rect. 4 1
8 34.86 atmosphere 1005.0 10 > th dose dependent rect. 4 1
10 34.89 wind 1.0 30 > th dose dependent rect. 4 1
13 35.29 temperature 25.0 270 > th dose independent rect. 1 3
15 35.31 temperature 25.0 270 > th dose dependent rect. 2 2
17 35.36 temperature 25.0 270 > th dose dependent rect. 1 4
19 35.42 atmosphere 1005.0 30 > th dose dependent rect. 2 3
26 35.50 humidity 90.0 10 < th dose dependent rect. 4 1
33 35.54 temperature 30.0 30 < th dose dependent rect. 4 1
37 35.57 wind 3.0 30 < th dose independent rect. 4 1
40 35.57 atmosphere 1005.0 30 > th dose independent rect. 4 1
44 35.58 temperature 10.0 30 > th dose independent rect. 4 1
46 35.58 temperature 30.0 30 < th dose independent rect. 4 1
47 35.58 humidity 50.0 30 > th dose independent rect. 4 1
51 35.58 atmosphere 995.0 30 > th dose independent rect. 4 1
52 35.58 atmosphere 1010.0 30 < th dose independent rect. 4 1
54 35.58 radiation 1.0 30 < th dose independent rect. 4 1
59 35.58 temperature 10.0 30 > th dose independent rect. 5 23
61 35.58 radiation 10.0 30 < th dose dependent rect. 4 1
67 35.59 precipitation 0.1 30 < th dose independent rect. 4 1
69 35.59 precipitation 0.1 30 < th dose dependent rect. 4 1
71 35.60 temperature 10.0 30 > th dose dependent rect. 4 1
72 35.61 wind 7.0 1440 < th dose independent rect. 5 1
74 35.61 temperature 10.0 1440 > th dose independent rect. 5 1
77 35.61 temperature 30.0 1440 < th dose independent rect. 5 1
81 35.61 humidity 50.0 1440 > th dose independent rect. 5 1
90 35.61 atmosphere 995.0 1440 > th dose independent rect. 5 1
91 35.61 atmosphere 1015.0 1440 < th dose independent rect. 5 1
92 35.61 radiation 20.0 1440 < th dose independent rect. 5 1
101 35.61 temperature 10.0 1440 > th dose independent rect. 6 23
109 35.65 humidity 50.0 30 > th dose dependent rect. 4 1
110 35.66 wind 9.0 30 < th dose dependent rect. 4 1
145 35.72 atmosphere 1015.0 30 < th dose dependent rect. 4 1
169 35.96 humidity 70.0 4320 > th dose independent rect. 21 1
174 36.00 humidity 70.0 4320 > th dose independent rect. 20 10
179 36.05 temperature 25.0 1440 < th dose independent rect. 1 1
181 36.07 humidity 50.0 4320 > th dose independent rect. 16 1
188 36.12 humidity 70.0 4320 > th dose independent rect. 20 6
196 36.14 wind 9.0 30 < th dose independent rect. 5 23
201 36.18 precipitation 0.1 30 < th dose independent rect. 5 23
202 36.18 wind 9.0 4320 > th dose dependent rect. 14 1
204 36.18 precipitation 0.1 30 < th dose dependent rect. 5 23
206 36.20 humidity 70.0 4320 > th dose independent rect. 22 5
242 36.43 humidity 50.0 10 > th dose independent rect. 5 23
249 36.49 humidity 70.0 4320 < th dose independent rect. 20 11
251 36.49 humidity 90.0 4320 < th dose dependent rect. 7 1
254 36.49 humidity 90.0 4320 < th dose dependent rect. 6 3
270 36.53 atmosphere 995.0 10 > th dose independent rect. 5 23
273 36.53 humidity 70.0 4320 < th dose dependent rect. 20 11
278 36.55 atmosphere 1005.0 30 > th dose independent rect. 2 3
290 36.58 humidity 80.0 4320 > th dose independent rect. 6 5
294 36.59 wind 9.0 4320 > th dose dependent rect. 14 3
296 36.60 humidity 70.0 4320 < th dose independent rect. 20 1
297 36.60 radiation 1.0 720 < th dose independent rect. 8 1
311 36.60 humidity 70.0 4320 < th dose dependent rect. 20 1
313 36.60 radiation 1.0 720 < th dose dependent rect. 8 1
333 36.63 atmosphere 1010.0 270 > th dose dependent rect. 12 1
341 36.64 humidity 80.0 4320 < th dose independent rect. 5 6
343 36.64 humidity 70.0 4320 < th dose independent rect. 20 13
345 36.64 atmosphere 1010.0 10 > th dose dependent rect. 12 1
378 36.65 humidity 50.0 4320 > th dose dependent rect. 6 3
385 36.67 atmosphere 995.0 30 > th dose dependent rect. 2 15
386 36.68 humidity 90.0 720 < th dose independent rect. 1 1
406 36.70 wind 9.0 4320 > th dose independent rect. 14 1
500 36.79 atmosphere 1000.0 30 > th dose independent rect. 3 23
508 36.81 atmosphere 1000.0 30 > th dose independent rect. 5 21
511 36.82 wind 1.0 14400 > th dose independent rect. 1 2
513 36.82 wind 9.0 4320 < th dose independent rect. 14 2
516 36.82 atmosphere 1000.0 10 < th dose independent rect. 7 20
564 36.88 humidity 50.0 10 > th dose independent rect. 5 21
570 36.89 humidity 50.0 4320 < th dose independent rect. 16 1
574 36.89 atmosphere 1010.0 30 > th dose dependent sin 0 NA
575 36.89 wind 1.0 14400 < th dose dependent rect. 6 2
586 36.90 atmosphere 995.0 30 > th dose dependent rect. 2 12
833 36.94 atmosphere 1000.0 90 > th dose independent rect. 11 18
860 36.95 wind 9.0 4320 > th dose independent rect. 11 6
861 36.95 atmosphere 1000.0 720 > th dose independent rect. 21 14
902 36.97 wind 3.0 30 < th dose independent rect. 2 3
917 36.98 wind 9.0 4320 < th dose independent rect. 11 6
929 36.99 atmosphere 1000.0 90 > th dose independent rect. 9 23
934 37.00 wind 3.0 4320 < th dose independent rect. 1 1
952 37.01 humidity 60.0 4320 > th dose independent rect. 18 1
964 37.02 atmosphere 995.0 720 > th dose independent rect. 7 8
966 37.02 atmosphere 1000.0 10 > th dose independent rect. 10 22
969 37.02 humidity 80.0 14400 < th dose dependent rect. 1 8
984 37.03 atmosphere 1000.0 270 > th dose independent rect. 9 20
1000 37.04 wind 9.0 4320 < th dose independent rect. 7 10