Os03g0144200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os03g0144200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.52 | 0.471 | 8.31 | -1.13 | 0.44 | -1.79 | 0.519 | -0.983 | 0.154 | 19.4 | 21.4 | 109 | -- | -- |
| 100.85 | 0.468 | 8.33 | -1.17 | 0.456 | -1.43 | 0.531 | -- | 0.142 | 19.3 | 21.9 | 65 | -- | -- |
| 101.25 | 0.469 | 8.31 | -1.13 | 0.443 | -1.77 | -- | -0.93 | 0.156 | 19.4 | 21.42 | 104 | -- | -- |
| 101.62 | 0.47 | 8.33 | -1.17 | 0.458 | -1.46 | -- | -- | 0.14 | 19.4 | 21.88 | 64 | -- | -- |
| 111.33 | 0.491 | 8.3 | -1.15 | -- | -1.92 | -- | -1.27 | 0.148 | -- | 21.34 | 142 | -- | -- |
| 121.4 | 0.517 | 8.29 | -0.895 | 0.481 | -- | 0.594 | -- | 0.285 | 18.2 | -- | -- | -- | -- |
| 122.25 | 0.518 | 8.29 | -0.901 | 0.484 | -- | -- | -- | 0.287 | 18.1 | -- | -- | -- | -- |
| 112.36 | 0.494 | 8.32 | -1.2 | -- | -1.5 | -- | -- | 0.129 | -- | 21.8 | 131 | -- | -- |
| 134.55 | 0.543 | 8.29 | -- | 0.483 | -0.896 | -- | -- | 0.31 | 18.9 | 22.07 | 46 | -- | -- |
| 134.4 | 0.542 | 8.28 | -0.915 | -- | -- | -- | -- | 0.276 | -- | -- | -- | -- | -- |
| 143.65 | 0.561 | 8.27 | -- | 0.497 | -- | -- | -- | 0.387 | 18 | -- | -- | -- | -- |
| 146.54 | 0.564 | 8.28 | -- | -- | -0.933 | -- | -- | 0.305 | -- | 21.9 | 57 | -- | -- |
| 156.47 | 0.584 | 8.26 | -- | -- | -- | -- | -- | 0.378 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.21 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 17 |
| 2 | 96.84 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 19 |
| 6 | 97.49 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 17 |
| 13 | 97.99 | temperature | 10 | 30 | > th | dose dependent | rect. | 9 | 17 |
| 15 | 98.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 42 | 99.74 | temperature | 10 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 49 | 100.05 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 9 |
| 54 | 100.17 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 19 |
| 55 | 100.19 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 68 | 100.48 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 75 | 100.87 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 9 | 17 |
| 81 | 101.02 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 18 |
| 95 | 101.18 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 21 |
| 131 | 101.51 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 8 |
| 141 | 101.59 | temperature | 20 | 90 | > th | dose independent | rect. | 16 | 23 |
| 161 | 101.79 | temperature | 25 | 10 | < th | dose dependent | rect. | 2 | 22 |
| 209 | 102.30 | temperature | 20 | 90 | < th | dose dependent | sin | 8 | NA |
| 221 | 102.34 | temperature | 20 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 253 | 102.50 | temperature | 20 | 90 | < th | dose dependent | no | NA | NA |
| 273 | 102.61 | temperature | 20 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 279 | 102.64 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 8 |
| 282 | 102.65 | temperature | 20 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 303 | 102.78 | temperature | 20 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 351 | 102.95 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 383 | 103.02 | temperature | 20 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 403 | 103.08 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 450 | 103.20 | humidity | 90 | 270 | < th | dose independent | rect. | 9 | 1 |
| 524 | 103.43 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 9 | 19 |
| 594 | 103.70 | temperature | 20 | 90 | < th | dose dependent | rect. | 23 | 12 |
| 661 | 103.90 | temperature | 20 | 90 | < th | dose independent | rect. | 10 | 21 |
| 842 | 104.43 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 23 |
| 888 | 104.56 | temperature | 20 | 30 | < th | dose independent | rect. | 16 | 21 |
| 915 | 104.62 | temperature | 20 | 90 | < th | dose independent | rect. | 1 | 23 |
| 917 | 104.63 | temperature | 10 | 90 | > th | dose dependent | sin | 8 | NA |
| 934 | 104.67 | atmosphere | 1010 | 270 | < th | dose independent | rect. | 17 | 9 |