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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0143200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.1 (0.0499) R2 : 0.403
β1 : -3.4 (0.228) R2dD : 0.611 R2D : -0.0489
β2 : 0.793 (0.114) R2dC : 0.0636 R2C : 0.00214
β3 : 2.98 (0.304) R2dE : 0.37 R2E : -0.244
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.6 (1.07) R2dD*E : 0.865 R2D*E : -0.952
γ1 : -0.202 (0.101) R2dN8 : 0.00769 R2N8 : -0.0645
σ : 0.819
deviance : 309.21
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_____
C
peak time of C : 18.4
E
wheather : radiation
threshold : 0.261
memory length : 4449
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
306.48 0.823 4.1 -3.42 0.804 2.99 -1.06 12.7 -0.195 18.3 0.2666 4451 -- --
373.16 0.907 3.81 -1.63 0.731 0.756 -2.24 -- 0.0606 15.3 0.2666 4451 -- --
309.21 0.819 4.1 -3.4 0.793 2.98 -- 12.6 -0.202 18.4 0.261 4449 -- --
375.03 0.902 3.81 -1.53 1.95 2.55 -- -- 0.329 17.3 5.91 1939 -- --
340.19 0.859 4.1 -3.44 -- 3.05 -- 12.8 -0.219 -- 0.2082 4426 -- --
395.54 0.932 3.85 -1.71 0.815 -- 0.726 -- 0.0196 20.7 -- -- -- --
396.56 0.933 3.85 -1.73 0.832 -- -- -- 0.0223 20.2 -- -- -- --
405.15 0.937 3.8 -2.04 -- 1.36 -- -- 0.202 -- 9.999 4463 -- --
439.15 0.976 3.76 -- 1.94 2.61 -- -- 0.472 17.2 3.889 1907 -- --
434.75 0.974 3.83 -1.74 -- -- -- -- 0.0128 -- -- -- -- --
475.77 1.02 3.8 -- 0.842 -- -- -- 0.215 20.1 -- -- -- --
483.65 1.02 3.73 -- -- 1.24 -- -- 0.429 -- 15.31 2995 -- --
514.6 1.06 3.78 -- -- -- -- -- 0.206 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 304.28 radiation 1 4320 < th dose dependent rect. 18 13
6 310.92 radiation 1 4320 < th dose dependent rect. 18 7
7 310.96 radiation 1 4320 < th dose dependent rect. 18 3
12 311.29 radiation 1 4320 < th dose dependent rect. 18 1
17 312.38 radiation 1 4320 < th dose dependent rect. 20 11
19 312.51 radiation 1 4320 < th dose independent rect. 18 13
21 312.77 radiation 1 4320 < th dose dependent rect. 23 8
25 312.95 radiation 1 4320 < th dose dependent rect. 4 3
55 315.43 radiation 1 4320 < th dose dependent sin 10 NA
63 316.04 atmosphere 1005 43200 > th dose independent rect. 16 1
64 316.04 temperature 20 14400 > th dose independent rect. 3 15
75 316.45 temperature 20 14400 < th dose independent rect. 3 15
80 316.58 temperature 20 14400 > th dose independent rect. 4 9
83 316.61 atmosphere 1005 43200 < th dose independent rect. 15 2
104 316.85 temperature 20 14400 < th dose independent rect. 4 9
115 316.94 temperature 20 14400 > th dose independent sin 2 NA
142 317.22 temperature 20 14400 < th dose independent sin 2 NA
198 317.93 atmosphere 1005 43200 < th dose independent rect. 15 9
201 317.95 temperature 30 720 < th dose dependent rect. 8 2
205 317.99 atmosphere 1005 43200 > th dose independent rect. 15 7
206 318.00 atmosphere 1005 43200 > th dose independent rect. 15 5
222 318.17 radiation 1 4320 > th dose independent rect. 18 13
238 318.28 radiation 1 14400 < th dose independent rect. 18 7
253 318.45 radiation 1 14400 < th dose independent rect. 18 3
269 318.65 radiation 1 14400 < th dose independent rect. 18 1
274 318.67 humidity 90 14400 < th dose independent rect. 21 5
286 318.81 atmosphere 1005 43200 < th dose independent rect. 15 4
330 319.23 atmosphere 1005 43200 > th dose independent rect. 12 7
349 319.39 atmosphere 1005 43200 > th dose independent rect. 12 5
353 319.42 atmosphere 1005 43200 > th dose independent rect. 18 1
372 319.49 atmosphere 1005 43200 < th dose independent rect. 13 6
396 319.74 atmosphere 1005 43200 < th dose independent rect. 18 1
460 320.37 temperature 20 14400 > th dose independent rect. 2 1
481 320.73 humidity 90 14400 < th dose independent rect. 1 1
543 321.56 humidity 90 14400 < th dose independent rect. 21 9
560 321.76 temperature 20 14400 < th dose independent rect. 2 1
564 321.79 temperature 10 720 > th dose dependent rect. 5 8
617 322.24 temperature 25 14400 < th dose dependent rect. 5 5
630 322.35 temperature 25 14400 < th dose dependent rect. 6 2
631 322.37 temperature 25 14400 < th dose dependent rect. 4 8
640 322.45 atmosphere 1005 43200 > th dose independent sin 18 NA
646 322.47 humidity 90 14400 > th dose independent rect. 22 4
653 322.50 temperature 15 270 > th dose dependent rect. 3 14
688 322.63 humidity 90 14400 > th dose independent rect. 24 2
708 322.71 temperature 20 14400 < th dose independent no NA NA
714 322.74 temperature 20 14400 < th dose independent rect. 15 23
733 322.84 atmosphere 1005 43200 < th dose independent sin 18 NA
735 322.84 temperature 20 14400 < th dose independent rect. 8 23
815 323.29 temperature 20 14400 > th dose independent no NA NA
824 323.34 temperature 20 14400 > th dose independent rect. 14 23
841 323.40 temperature 20 14400 < th dose independent rect. 6 23
872 323.56 temperature 20 14400 > th dose independent rect. 8 23
900 323.68 temperature 25 14400 < th dose dependent sin 4 NA
951 323.98 temperature 20 14400 > th dose independent rect. 6 23
962 324.03 radiation 1 4320 < th dose independent rect. 5 2
995 324.14 wind 1 43200 < th dose independent rect. 20 10