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Os03g0142800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MRP-like ABC transporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0222) R2 : 0.571
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.873 (0.0575) R2dC : 0.213 R2C : 0.156
β3 : 1.72 (0.121) R2dE : 0.209 R2E : 0.25
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.465 (0.0482) R2dN8 : 0.126 R2N8 : 0.168
σ : 0.412
deviance : 78.36
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_____
C
peak time of C : 6.56
E
wheather : temperature
threshold : 22.32
memory length : 1294
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.99 0.393 10.5 -0.591 0.838 1.22 0.915 0.0315 -0.548 6.38 23.37 1111 -- --
69.86 0.389 10.5 -0.582 0.86 1.25 0.933 -- -0.553 6.42 23 1161 -- --
71.82 0.395 10.5 -0.573 0.863 1.35 -- 0.286 -0.549 6.34 22.81 1168 -- --
71.76 0.395 10.5 -0.553 0.859 1.32 -- -- -0.554 6.49 22.8 1232 -- --
90.8 0.444 10.5 -0.544 -- 1.4 -- -0.191 -0.487 -- 31.73 430 -- --
88.41 0.441 10.6 -0.935 0.838 -- 0.951 -- -0.758 6.77 -- -- -- --
90.71 0.446 10.6 -0.919 0.841 -- -- -- -0.761 6.81 -- -- -- --
90.57 0.443 10.5 -0.545 -- 1.49 -- -- -0.472 -- 30.62 438 -- --
78.36 0.412 10.5 -- 0.873 1.72 -- -- -0.465 6.56 22.32 1294 -- --
127.7 0.528 10.6 -0.9 -- -- -- -- -0.745 -- -- -- -- --
112.95 0.497 10.5 -- 0.83 -- -- -- -0.658 6.88 -- -- -- --
97.67 0.46 10.5 -- -- 1.67 -- -- -0.371 -- 30.1 460 -- --
149.07 0.57 10.6 -- -- -- -- -- -0.645 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 65.24 wind 3.0 43200 < th dose dependent rect. 5 1
6 67.47 temperature 20.0 14400 < th dose independent rect. 20 2
8 67.57 humidity 80.0 14400 > th dose independent rect. 13 1
9 67.61 wind 1.0 43200 < th dose dependent rect. 4 9
10 67.62 wind 1.0 43200 > th dose dependent rect. 5 1
11 67.72 humidity 80.0 43200 < th dose independent rect. 6 1
12 67.72 wind 3.0 14400 < th dose dependent rect. 23 2
14 67.78 wind 1.0 14400 > th dose independent rect. 4 4
15 67.80 wind 1.0 14400 < th dose dependent rect. 4 4
16 67.81 temperature 20.0 14400 > th dose independent rect. 20 1
17 67.81 wind 1.0 43200 < th dose dependent rect. 4 7
20 67.96 precipitation 0.1 14400 > th dose independent rect. 7 1
21 67.96 precipitation 0.1 14400 > th dose dependent rect. 7 1
25 68.02 wind 1.0 14400 < th dose independent rect. 4 4
27 68.10 precipitation 0.1 14400 < th dose independent rect. 7 1
29 68.10 precipitation 0.1 14400 < th dose dependent rect. 7 1
30 68.11 wind 9.0 43200 < th dose independent rect. 10 4
33 68.12 humidity 80.0 43200 > th dose independent rect. 6 1
38 68.15 wind 5.0 43200 < th dose dependent rect. 1 1
39 68.17 wind 1.0 43200 < th dose dependent rect. 12 1
40 68.18 wind 5.0 14400 < th dose dependent rect. 20 12
41 68.19 temperature 25.0 14400 < th dose independent rect. 10 1
48 68.24 wind 5.0 14400 < th dose dependent rect. 21 9
53 68.30 wind 9.0 43200 > th dose independent rect. 10 4
75 68.45 humidity 90.0 14400 > th dose dependent rect. 9 1
84 68.51 wind 1.0 43200 > th dose independent rect. 5 2
88 68.52 wind 1.0 14400 > th dose dependent rect. 21 11
97 68.56 temperature 25.0 14400 > th dose independent rect. 10 1
114 68.64 wind 1.0 43200 > th dose independent rect. 22 9
116 68.69 wind 9.0 43200 < th dose independent rect. 9 7
120 68.72 wind 9.0 14400 < th dose dependent rect. 23 3
128 68.77 wind 9.0 43200 > th dose independent rect. 9 7
141 68.86 humidity 80.0 14400 < th dose independent rect. 13 1
142 68.86 wind 1.0 43200 > th dose independent rect. 4 9
143 68.86 wind 1.0 14400 > th dose dependent rect. 23 3
155 68.92 radiation 40.0 43200 > th dose dependent rect. 11 1
158 68.93 precipitation 0.1 14400 > th dose independent rect. 4 12
159 68.93 wind 1.0 43200 > th dose dependent rect. 1 1
168 68.97 radiation 30.0 43200 < th dose independent rect. 11 1
169 68.97 precipitation 0.1 14400 < th dose independent rect. 4 12
173 68.97 precipitation 0.1 14400 < th dose dependent rect. 4 12
186 69.01 wind 1.0 43200 < th dose independent rect. 22 9
197 69.04 wind 1.0 43200 < th dose dependent rect. 23 14
203 69.08 humidity 80.0 14400 > th dose dependent rect. 12 2
204 69.08 wind 7.0 43200 > th dose dependent rect. 10 4
227 69.14 precipitation 0.1 14400 > th dose dependent rect. 5 5
240 69.18 temperature 25.0 14400 < th dose independent rect. 10 4
254 69.22 precipitation 0.1 14400 < th dose independent rect. 5 5
258 69.22 precipitation 0.1 14400 < th dose dependent rect. 5 5
261 69.23 radiation 40.0 43200 > th dose independent rect. 11 1
264 69.23 precipitation 0.1 14400 > th dose independent rect. 5 5
270 69.25 temperature 25.0 14400 > th dose independent rect. 10 4
284 69.29 wind 1.0 14400 < th dose independent rect. 5 2
289 69.30 precipitation 0.1 14400 > th dose independent rect. 4 10
296 69.31 wind 7.0 14400 < th dose dependent sin 9 NA
305 69.33 wind 9.0 43200 > th dose independent rect. 9 9
316 69.36 precipitation 0.1 14400 < th dose independent rect. 4 10
320 69.36 precipitation 0.1 14400 < th dose dependent rect. 4 10
332 69.39 temperature 25.0 14400 > th dose independent rect. 12 1
352 69.44 wind 1.0 43200 < th dose independent rect. 24 2
353 69.44 wind 9.0 43200 < th dose independent rect. 9 9
357 69.45 temperature 25.0 14400 < th dose independent rect. 13 1
358 69.45 wind 1.0 43200 > th dose independent rect. 24 2
379 69.50 wind 1.0 43200 < th dose dependent sin 7 NA
399 69.53 wind 1.0 43200 < th dose dependent rect. 19 18
404 69.54 humidity 80.0 14400 > th dose dependent rect. 9 5
418 69.58 wind 1.0 14400 > th dose dependent sin 9 NA
446 69.62 wind 1.0 14400 > th dose independent sin 8 NA
456 69.63 precipitation 0.1 14400 > th dose dependent rect. 4 9
486 69.68 wind 1.0 14400 > th dose independent rect. 2 10
519 69.73 wind 1.0 43200 > th dose independent rect. 23 14
547 69.77 wind 1.0 43200 < th dose independent rect. 4 9
560 69.79 wind 9.0 43200 > th dose independent rect. 10 21
577 69.83 radiation 10.0 43200 < th dose independent rect. 12 1
599 69.86 wind 9.0 43200 > th dose independent rect. 9 12
615 69.88 wind 9.0 43200 < th dose independent rect. 10 21
626 69.89 wind 7.0 14400 < th dose dependent rect. 4 5
658 69.94 wind 9.0 43200 < th dose independent sin 22 NA
665 69.95 precipitation 0.1 14400 > th dose independent rect. 7 3
666 69.95 precipitation 0.1 14400 < th dose independent rect. 7 3
668 69.95 precipitation 0.1 14400 > th dose dependent rect. 7 3
669 69.95 precipitation 0.1 14400 < th dose dependent rect. 7 3
674 69.96 wind 9.0 43200 > th dose independent sin 21 NA
679 69.96 wind 9.0 43200 < th dose independent rect. 9 12
686 69.97 wind 9.0 43200 < th dose independent rect. 9 14
702 69.98 wind 9.0 43200 > th dose dependent rect. 11 20
750 70.04 wind 9.0 14400 < th dose dependent rect. 7 1
765 70.06 wind 7.0 43200 > th dose dependent rect. 9 7
878 70.17 wind 1.0 14400 < th dose independent sin 8 NA
978 70.24 humidity 80.0 43200 < th dose independent rect. 4 5
984 70.24 humidity 60.0 43200 < th dose independent rect. 21 13