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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0142600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Myb, DNA-binding domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.2 (0.0304) R2 : 0.11
β1 : -0.828 (0.111) R2dD : 0.112 R2D : 0.109
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0365 (0.0649) R2dN8 : 0.000827 R2N8 : -0.00259
σ : 0.571
deviance : 149.15
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
119.8 0.514 5.19 -0.817 0.548 1.09 -0.336 3.01 0.0216 16.6 998.3 2435 -- --
121.13 0.513 5.2 -0.901 0.539 1.27 -0.365 -- 0.0198 16.6 999.5 1801 -- --
119.95 0.51 5.19 -0.808 0.543 1.25 -- 3.34 0.0275 16.6 998.2 2539 -- --
121.48 0.513 5.2 -0.902 0.533 1.27 -- -- 0.0211 16.7 999.5 1776 -- --
135.94 0.543 5.19 -0.844 -- 1.08 -- 2.59 0.00857 -- 998.5 2484 -- --
133.57 0.542 5.21 -0.805 0.536 -- -0.4 -- -0.0204 16.6 -- -- -- --
134 0.542 5.21 -0.808 0.533 -- -- -- -0.0225 16.6 -- -- -- --
136.52 0.544 5.19 -0.923 -- 1.26 -- -- 0.0102 -- 999.5 1865 -- --
142.05 0.555 5.18 -- 0.551 1.15 -- -- 0.11 16.6 998.5 2003 -- --
149.15 0.571 5.2 -0.828 -- -- -- -- -0.0365 -- -- -- -- --
151.2 0.575 5.19 -- 0.548 -- -- -- 0.0675 16.5 -- -- -- --
158.08 0.586 5.17 -- -- 1.1 -- -- 0.0998 -- 998.7 2060 -- --
167.26 0.604 5.18 -- -- -- -- -- 0.0554 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 118.52 temperature 25 30 > th dose independent rect. 24 9
2 118.74 atmosphere 1000 90 < th dose dependent rect. 4 3
3 118.75 atmosphere 1000 90 < th dose independent rect. 4 3
9 119.57 temperature 25 4320 > th dose dependent rect. 23 10
10 119.63 atmosphere 1000 1440 < th dose dependent rect. 4 1
12 119.89 atmosphere 1000 10 < th dose independent rect. 4 2
14 119.89 atmosphere 1000 10 < th dose dependent rect. 4 3
43 120.10 atmosphere 1000 270 < th dose dependent rect. 2 4
45 120.13 temperature 25 30 > th dose dependent rect. 5 1
67 120.42 atmosphere 1000 90 < th dose dependent rect. 4 5
68 120.42 atmosphere 1000 1440 < th dose dependent rect. 23 10
70 120.42 atmosphere 1000 1440 < th dose dependent rect. 22 13
71 120.43 atmosphere 1000 1440 < th dose dependent rect. 23 7
115 120.66 atmosphere 1000 1440 < th dose dependent sin 8 NA
137 120.84 temperature 25 30 > th dose independent rect. 4 5
149 120.92 temperature 25 4320 > th dose dependent rect. 8 1
173 121.05 temperature 25 270 > th dose independent rect. 24 8
220 121.29 temperature 25 270 > th dose dependent rect. 3 3
223 121.31 atmosphere 1000 270 < th dose independent rect. 2 4
266 121.52 temperature 25 270 > th dose independent rect. 1 6
276 121.54 atmosphere 1000 1440 < th dose dependent rect. 10 22
277 121.55 atmosphere 1000 1440 < th dose dependent rect. 11 20
289 121.56 atmosphere 1000 1440 < th dose dependent no NA NA
308 121.59 temperature 25 270 > th dose independent rect. 2 4
322 121.61 atmosphere 1000 1440 < th dose dependent rect. 24 23
331 121.63 atmosphere 1000 1440 < th dose dependent rect. 4 23
396 121.79 temperature 25 270 < th dose dependent rect. 23 11
468 122.05 temperature 25 270 > th dose dependent rect. 4 1
492 122.11 temperature 25 30 > th dose independent rect. 5 1
498 122.14 temperature 25 270 < th dose dependent sin 7 NA
506 122.20 atmosphere 1000 1440 < th dose independent rect. 6 3
517 122.23 atmosphere 1000 1440 < th dose independent rect. 6 1
518 122.23 atmosphere 1000 1440 > th dose independent rect. 6 3
522 122.24 atmosphere 1000 1440 > th dose independent rect. 6 1
529 122.26 temperature 25 720 > th dose dependent rect. 21 9
545 122.31 atmosphere 1010 270 < th dose dependent rect. 1 6
552 122.33 temperature 25 270 > th dose dependent rect. 23 9
561 122.36 atmosphere 1010 270 < th dose dependent rect. 23 8
564 122.37 temperature 25 720 > th dose dependent rect. 23 6
607 122.50 atmosphere 995 1440 > th dose independent rect. 17 1
625 122.54 atmosphere 1000 1440 < th dose independent rect. 4 10
639 122.57 temperature 20 720 > th dose dependent rect. 19 12
655 122.60 temperature 25 720 < th dose dependent rect. 23 3
671 122.64 atmosphere 995 1440 > th dose independent rect. 10 21
693 122.68 atmosphere 1000 1440 < th dose dependent rect. 13 1
704 122.70 atmosphere 1000 1440 > th dose independent rect. 9 1
722 122.73 temperature 25 720 > th dose dependent rect. 23 2
854 122.95 atmosphere 995 1440 > th dose independent rect. 10 14
858 122.97 atmosphere 1000 1440 < th dose independent sin 4 NA
877 123.00 atmosphere 1010 720 < th dose dependent rect. 18 8
887 123.02 atmosphere 1000 1440 > th dose independent sin 4 NA
909 123.07 atmosphere 995 1440 > th dose independent rect. 8 23
940 123.12 atmosphere 995 1440 > th dose independent rect. 10 23
950 123.15 atmosphere 1000 270 < th dose dependent sin 8 NA
988 123.21 atmosphere 1000 1440 < th dose independent rect. 12 1
990 123.21 atmosphere 995 1440 > th dose independent rect. 10 8