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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0142500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.58 (0.0377) R2 : 0.244
β1 : 0.735 (0.138) R2dD : 0.0539 R2D : 0.0133
β2 : 3.83 (0.342) R2dC : 2.79 R2C : -2.57
β3 : 4.61 (0.413) R2dE : 2.76 R2E : -2.61
β4 : 5.89 (1.17) R2dD*C : 0.314 R2D*C : -0.268
β5 : 6.42 (1.44) R2dD*E : 0.25 R2D*E : -0.266
γ1 : 0.246 (0.0791) R2dN8 : 0.0229 R2N8 : -0.0287
σ : 0.677
deviance : 207.36
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_____
C
peak time of C : 18.3
E
wheather : radiation
threshold : 0.5997
memory length : 714
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
207.36 0.677 3.58 0.735 3.83 4.61 5.89 6.42 0.246 18.3 0.5997 714 -- --
227.48 0.708 3.49 0.614 0.113 0.595 -1.37 -- 0.148 11.3 0.8559 687 -- --
230.03 0.712 3.49 0.552 0.115 0.586 -- 0.909 0.135 12.7 0.5997 714 -- --
225.8 0.7 3.54 0.612 0.596 0.683 -- -- 0.207 23.9 10.21 1376 -- --
230.26 0.711 3.5 0.546 -- 0.513 -- 0.919 0.133 -- 0.5997 714 -- --
236.48 0.721 3.5 0.584 0.589 -- 1.39 -- 0.136 23.3 -- -- -- --
244.8 0.733 3.51 0.527 0.582 -- -- -- 0.13 23.3 -- -- -- --
235.45 0.715 3.44 0.573 -- 1.02 -- -- 0.371 -- 10.11 1669 -- --
235.48 0.715 3.48 -- 0.771 0.763 -- -- 0.204 23.4 10.12 1260 -- --
266.03 0.762 3.49 0.542 -- -- -- -- 0.136 -- -- -- -- --
252.13 0.743 3.52 -- 0.588 -- -- -- 0.0713 23.4 -- -- -- --
239.78 0.721 3.47 -- -- 1.15 -- -- 0.249 -- 3.79 1627 -- --
273.78 0.772 3.51 -- -- -- -- -- 0.0756 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 195.79 radiation 1 720 < th dose dependent rect. 8 11
7 196.55 radiation 10 720 < th dose dependent rect. 14 5
8 196.81 radiation 1 720 > th dose independent rect. 11 8
19 196.99 radiation 10 720 < th dose dependent rect. 16 10
23 197.12 radiation 1 720 < th dose independent rect. 9 10
30 197.69 radiation 1 720 < th dose dependent rect. 8 19
68 199.46 radiation 1 720 < th dose independent rect. 8 19
77 199.87 humidity 50 720 > th dose dependent rect. 16 4
82 200.01 radiation 1 720 < th dose dependent rect. 22 21
90 200.36 temperature 30 720 < th dose independent rect. 16 4
168 202.52 radiation 1 720 > th dose independent sin 16 NA
182 202.91 radiation 1 720 < th dose independent rect. 23 20
190 203.10 humidity 70 720 > th dose independent rect. 16 4
193 203.13 radiation 1 720 < th dose dependent sin 22 NA
194 203.15 temperature 30 720 < th dose independent rect. 16 13
198 203.17 radiation 10 1440 < th dose dependent sin 17 NA
238 203.55 radiation 1 720 < th dose independent rect. 22 22
243 203.71 radiation 1 720 < th dose independent rect. 17 10
246 203.73 radiation 1 720 < th dose independent sin 20 NA
480 205.33 temperature 10 90 > th dose dependent rect. 20 23
583 206.01 temperature 25 720 > th dose dependent rect. 12 21
713 206.38 temperature 30 90 < th dose dependent rect. 11 10
732 206.44 temperature 10 720 > th dose dependent rect. 12 11
768 206.60 temperature 25 720 > th dose dependent rect. 12 16
782 206.64 temperature 25 1440 > th dose dependent rect. 14 2
842 206.75 temperature 30 720 < th dose dependent rect. 17 2
880 206.87 temperature 30 90 < th dose dependent rect. 17 4
951 207.11 temperature 25 720 > th dose dependent sin 18 NA
953 207.11 temperature 10 720 > th dose dependent rect. 12 6
980 207.17 radiation 40 1440 < th dose dependent rect. 15 7
989 207.19 temperature 30 10 < th dose dependent rect. 10 11